View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3631_low_5 (Length: 441)
Name: NF3631_low_5
Description: NF3631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3631_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 198 - 432
Target Start/End: Original strand, 48032168 - 48032403
Alignment:
| Q |
198 |
tcgtatgatctgaaatatatgatgcgttgttgagttggagtgaattgcggatggaaaa-aatgaacaaggtttacatagaacttagatacatagattaat |
296 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48032168 |
tcgtatgatctgaaatatatgatgcgttattgagttggagtgaattgcggatggaaaaaaatgaacaaggtttacatagaacttagatacatagattaat |
48032267 |
T |
|
| Q |
297 |
gcagtgatgattgatgagttggctatctaacaatcattttgtctgagtttccagtaaatccttagtaaaatccttatttaacaatcttgggcatacctta |
396 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48032268 |
gcagtgatgattgacgagttggctatctaacaatcattttgtctgagtttccagtaaatccttagtaaaatccttatttaacaatcttgggcatacctta |
48032367 |
T |
|
| Q |
397 |
atttcagtacgttaactataaaggatgatgatgatg |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
48032368 |
atttcagtacgttaactataaaggatgatgatgatg |
48032403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University