View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3631_low_6 (Length: 414)
Name: NF3631_low_6
Description: NF3631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3631_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 42 - 403
Target Start/End: Original strand, 4800905 - 4801266
Alignment:
| Q |
42 |
ccaaccgatagttcacgcagacaacctgacaattttaccaattcaaaggtttaaagccaaaaaagttctaagaagcacttgaatactcaatctgtcatac |
141 |
Q |
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| T |
4800905 |
ccaaccgatagttcacgcagacaacctgacaattttaccaattcaaaggtttaaagccaaaaaagttctaagaagcacttgtatactcaatctgtcatac |
4801004 |
T |
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| Q |
142 |
tcatacaagttgcaacatgttcattcttatataaactcaagaatttcttcattcattacattttcttttcaaaagaacaaatacaagaacaaccagaaac |
241 |
Q |
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| T |
4801005 |
tcatacaagttgcaacatgttcattcttatataaactcaagaatttcttcattcattacattttcttttcaaaagaacaaatacaagaacaaccagaaac |
4801104 |
T |
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| Q |
242 |
ccttnnnnnnntgcacacatcacctaactcccaaaacacaaattttgaacacagtgatcttcaaaaatccaagtcctgcaactctatacataatttcaca |
341 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4801105 |
ccttaaaaaaatgcacacatcacctaactcccaaaacacaaattttgaacacagtgatcttcaaaaatccaagtcctgcaactctatacataatttcaca |
4801204 |
T |
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| Q |
342 |
gaagtaatgatagttgcaaacactttactcacatgctcctcatgtaactccatgcccttcat |
403 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4801205 |
gaagtaattatagttgcaaacactttactcacatgctcctcatgtaactccatgcccttcat |
4801266 |
T |
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