View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3631_low_9 (Length: 341)
Name: NF3631_low_9
Description: NF3631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3631_low_9 |
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| [»] scaffold1956 (1 HSPs) |
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| [»] scaffold0130 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 36541094 - 36541420
Alignment:
| Q |
1 |
tttttaacttatctcttggcgagcttgtcttcgtcatgtctatgattcatctgaaacacacttttcaaagtaactactataataaataaaggaatcttaa |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36541094 |
tttttaacttctctcttggcgagcttgtcttcgtcatgtctatgattcatctgaaacacacttttcaaagtaactactataataaataaaggaatcttaa |
36541193 |
T |
|
| Q |
101 |
tcgtattcaatcatattcgatgagaactaaccattctttgtcgttctcctattagctcgaccttattttctcctacttttcctcccatcttcattcttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36541194 |
tcgtattcaatcatattcgatgagaactaaccattctttgccgttctcctattagctcgaccttattttctcctacttttcctcccatcttcattcttct |
36541293 |
T |
|
| Q |
201 |
actaaattgggaatatcttatttgattttattcttttcgattct-ccactaactttggactatcttgccccttaacttatcatgctcctattaaatccga |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36541294 |
actaaattgggaatatcttatttgattttattcttttcgattctcccactaactttggactatcttgccccttaacttatcatgctcctattaaatccga |
36541393 |
T |
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| Q |
300 |
actaactcactcacttcattattttct |
326 |
Q |
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||||||||||||||||||||||||||| |
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| T |
36541394 |
actaactcactcacttcattattttct |
36541420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 302
Target Start/End: Original strand, 19006296 - 19006390
Alignment:
| Q |
207 |
ttgggaatatcttatttgattttattcttttcgattctccactaactttggactatcttgccccttaacttatcatgctcctattaaatccgaact |
302 |
Q |
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| T |
19006296 |
ttgggaatatcttatttgactttatt-ttttagttttccaactaattttggactatcttgcctattaattgatcatgctcttattaaatccgaact |
19006390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 4280755 - 4280809
Alignment:
| Q |
257 |
gactatcttgccccttaacttatcatgctcctattaaatccgaactaactcactc |
311 |
Q |
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| T |
4280755 |
gactatcttgcccgttaacttgccatgctcctattacatctgaactaacttactc |
4280809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 4280836 - 4280890
Alignment:
| Q |
257 |
gactatcttgccccttaacttatcatgctcctattaaatccgaactaactcactc |
311 |
Q |
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| T |
4280836 |
gactatcttgcccgttaacttgccatgctcctattacatctgaactaacttactc |
4280890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 20677816 - 20677867
Alignment:
| Q |
271 |
ttaacttatcatgctcctattaaatccgaactaactcactcacttcattatt |
322 |
Q |
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| T |
20677816 |
ttaacttatcattctcctattaaatccgaactaactcgctcactccattatt |
20677867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 17533904 - 17533958
Alignment:
| Q |
266 |
gccccttaacttatcatgctcctattaaatccgaactaactcactcacttcatta |
320 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||| |||||| ||||| |
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| T |
17533904 |
gcccattaacttatcattctcctattaaatccgaactaactcgctcactccatta |
17533958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 16079235 - 16079280
Alignment:
| Q |
97 |
ttaatcgtattcaatcatattcgatgagaactaaccattctttgtc |
142 |
Q |
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|||||| ||| ||||||||||| |||||||||||| |||||||||| |
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| T |
16079235 |
ttaatcatatgcaatcatattcaatgagaactaactattctttgtc |
16079280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1956 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1956
Description:
Target: scaffold1956; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 289 - 348
Alignment:
| Q |
82 |
ataaataaaggaatcttaatcgtattcaatcatattcgatgagaactaaccattctttgt |
141 |
Q |
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|||||||||||| ||||||| |||| ||||||||||| ||| |||||||| | ||||||| |
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| T |
289 |
ataaataaaggagtcttaattgtatgcaatcatattcaatgtgaactaactactctttgt |
348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 16621 - 16675
Alignment:
| Q |
257 |
gactatcttgccccttaacttatcatgctcctattaaatccgaactaactcactc |
311 |
Q |
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|
||||||||||||| ||||||| ||||||||||||| ||| ||||||||| |||| |
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| T |
16621 |
gactatcttgcccattaacttgccatgctcctattacatctgaactaacttactc |
16675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 16702 - 16756
Alignment:
| Q |
257 |
gactatcttgccccttaacttatcatgctcctattaaatccgaactaactcactc |
311 |
Q |
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||||||||||||| ||||||| ||||||||||||| ||| ||||||||| |||| |
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| T |
16702 |
gactatcttgcccgttaacttgccatgctcctattacatctgaactaacttactc |
16756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 9068034 - 9067954
Alignment:
| Q |
63 |
tttcaaagtaactactataataaataaaggaatctt-aatcgtattcaatcatattcgatgagaactaaccattctttgtc |
142 |
Q |
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||||||||||| | ||| ||||||||| || |||| |||| ||| ||||||||||| ||| |||||||| |||||||||| |
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| T |
9068034 |
tttcaaagtaatcagtatcataaataaacgagtctttaatcatatgcaatcatattcaatgggaactaactattctttgtc |
9067954 |
T |
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