View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3632_high_10 (Length: 278)

Name: NF3632_high_10
Description: NF3632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3632_high_10
NF3632_high_10
[»] chr2 (2 HSPs)
chr2 (1-262)||(13557479-13557740)
chr2 (43-161)||(2482548-2482666)
[»] scaffold0039 (1 HSPs)
scaffold0039 (53-153)||(102624-102727)
[»] chr1 (5 HSPs)
chr1 (53-153)||(11021741-11021844)
chr1 (43-83)||(27410347-27410387)
chr1 (31-133)||(30750132-30750233)
chr1 (31-133)||(30751943-30752044)
chr1 (31-133)||(30771583-30771684)
[»] chr8 (4 HSPs)
chr8 (53-153)||(6402417-6402519)
chr8 (53-153)||(33842409-33842511)
chr8 (53-107)||(41902551-41902605)
chr8 (103-152)||(41902616-41902665)
[»] scaffold0005 (1 HSPs)
scaffold0005 (95-262)||(197954-198120)
[»] chr4 (2 HSPs)
chr4 (95-262)||(14619257-14619423)
chr4 (31-262)||(24676062-24676291)
[»] chr6 (1 HSPs)
chr6 (101-146)||(26389463-26389508)
[»] chr3 (1 HSPs)
chr3 (50-149)||(21933289-21933391)
[»] chr5 (1 HSPs)
chr5 (96-146)||(21031531-21031581)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 13557479 - 13557740
Alignment:
Q  1 cttgtcaagcacaatggtaattcacatttgctttctcttaactttgacttgacacaaaatgacaaatgttgcctctgctggatgtaactcatgggaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  13557479 cttgtcaagcacaatggtaattcacatttgctttctcttaactttgacttgacacaaaatgacaaatgttgcctctgctggatgcaactcatgagaaatc 13557578  T
Q  101 acaaaaacacctcattggatggtgtttctccaaatcaacttttgtatgtgtctgacctcacaaatgtcatatagaaccgtggattatgtatgctatttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  13557579 acaaaaacacctcattggatggtgtttctccaaatcaacttttgtatgtgtcttacctcacgaatgtcatatagaaccgtggattatgtatgctatttct 13557678  T
Q  201 ctgggaacatggttttattaatacatactatatgcaaaagcatcaataaactagcaagaaat 262  Q
    ||||||| | ||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  13557679 ctgggaaaaaggttttattaatatatactatatacaaaagcatcaataaactagcaagaaat 13557740  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 2482666 - 2482548
Alignment:
Q  43 tttgacttgacacaaaatgacaaatgttgcctctgctggatgtaactcatgggaaatcacaaaaacacctcattggatggtgtttctccaaatcaacttt 142  Q
    ||||| |||||| |||||||||||  |||||||| |||||| |   | ||| |||||||||||||||||||||| | |||||||||||||| ||||||||    
T  2482666 tttgatttgacagaaaatgacaaagtttgcctcttctggatatttttgatgagaaatcacaaaaacacctcattcggtggtgtttctccaagtcaacttt 2482567  T
Q  143 tgtatgtgtctgacctcac 161  Q
    ||||| ||||| |||||||    
T  2482566 tgtatttgtcttacctcac 2482548  T

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Target: scaffold0039 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 102624 - 102727
Alignment:
Q  53 cacaaaatgacaaatgttgcctctgctggatgtaactcatgggaaatcac---aaaaacacctcattggatggtgtttctccaaatcaacttttgtatgt 149  Q
    ||||||||||||||| ||||||||||||||| |  |||||| ||||||||   ||||||||||||||  ||| || ||||||||||||||||||||||||    
T  102624 cacaaaatgacaaatcttgcctctgctggatctttctcatgagaaatcacaaaaaaaacacctcattcaatgatggttctccaaatcaacttttgtatgt 102723  T
Q  150 gtct 153  Q
    ||||    
T  102724 gtct 102727  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 11021844 - 11021741
Alignment:
Q  53 cacaaaatgacaaatgttgcctctgctggatgtaactcatgggaaatcacaaaaa---cacctcattggatggtgtttctccaaatcaacttttgtatgt 149  Q
    ||||||||||||||| ||||||||||||||| |  |||||| |||||||||||||   |||||||||  ||| || ||||||||||||||||||||||||    
T  11021844 cacaaaatgacaaatcttgcctctgctggatctttctcatgagaaatcacaaaaaaaacacctcattcaatgatggttctccaaatcaacttttgtatgt 11021745  T
Q  150 gtct 153  Q
    ||||    
T  11021744 gtct 11021741  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 27410347 - 27410387
Alignment:
Q  43 tttgacttgacacaaaatgacaaatgttgcctctgctggat 83  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  27410347 tttgatttgacacaaaatgacaaatgttgcctcagctggat 27410387  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 30750132 - 30750233
Alignment:
Q  31 ctttctcttaactttgacttgacacaaaatgacaaatgttgcctctgctggatgtaactcatgggaaatcacaaaaacacctcattggatggtgtttctc 130  Q
    |||| |||||| ||| | |||||||||| |||||||  |||||||| || ||| || || |||  |||||||||||| |||||||||| ||||| |||||    
T  30750132 ctttatcttaattttaatttgacacaaagtgacaaactttgcctcttctagatatatcttatgataaatcacaaaaatacctcattgg-tggtgcttctc 30750230  T
Q  131 caa 133  Q
    |||    
T  30750231 caa 30750233  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 30751943 - 30752044
Alignment:
Q  31 ctttctcttaactttgacttgacacaaaatgacaaatgttgcctctgctggatgtaactcatgggaaatcacaaaaacacctcattggatggtgtttctc 130  Q
    |||| |||||| ||| | |||||||||| |||||||  |||||||| || ||| || || |||  |||||||||||| |||||||||| ||||| |||||    
T  30751943 ctttatcttaattttaatttgacacaaagtgacaaactttgcctcttctagatatatcttatgataaatcacaaaaatacctcattgg-tggtgcttctc 30752041  T
Q  131 caa 133  Q
    |||    
T  30752042 caa 30752044  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 30771583 - 30771684
Alignment:
Q  31 ctttctcttaactttgacttgacacaaaatgacaaatgttgcctctgctggatgtaactcatgggaaatcacaaaaacacctcattggatggtgtttctc 130  Q
    |||| |||||| ||| | |||||||||| |||||||  |||||||| || ||| || || |||  |||||||||||| |||||||||| ||||| |||||    
T  30771583 ctttatcttaattttaatttgacacaaagtgacaaactttgcctcttctagatatatcttatgataaatcacaaaaatacctcattgg-tggtgcttctc 30771681  T
Q  131 caa 133  Q
    |||    
T  30771682 caa 30771684  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 6402417 - 6402519
Alignment:
Q  53 cacaaaatgacaaatgttgcctctgctggatgtaactcatgggaaatcac--aaaaacacctcattggatggtgtttctccaaatcaacttttgtatgtg 150  Q
    ||||||||||||||| ||||||||||||||| |  |||||| ||||||||  ||||||||||||||  ||| || ||||||||||||||||||| |||||    
T  6402417 cacaaaatgacaaatcttgcctctgctggatctttctcatgagaaatcacaaaaaaacacctcattcaatgatggttctccaaatcaacttttgcatgtg 6402516  T
Q  151 tct 153  Q
    |||    
T  6402517 tct 6402519  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 33842511 - 33842409
Alignment:
Q  53 cacaaaatgacaaatgttgcctctgctggatgtaactcatgggaaatcacaaaaa--cacctcattggatggtgtttctccaaatcaacttttgtatgtg 150  Q
    ||||||||||||||| ||| ||||||||||| |  ||||||  ||||||||||||  |||||||||  ||| || |||||||||||||||||||||||||    
T  33842511 cacaaaatgacaaatcttgtctctgctggatctttctcatgaaaaatcacaaaaaaacacctcattcaatgatggttctccaaatcaacttttgtatgtg 33842412  T
Q  151 tct 153  Q
    |||    
T  33842411 tct 33842409  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 41902551 - 41902605
Alignment:
Q  53 cacaaaatgacaaatgttgcctctgctggatgtaactcatgggaaatcacaaaaa 107  Q
    ||||||||||||||| |||||||| |||||| |  |||||| |||||||||||||    
T  41902551 cacaaaatgacaaatcttgcctctactggatctttctcatgtgaaatcacaaaaa 41902605  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 41902616 - 41902665
Alignment:
Q  103 aaaaacacctcattggatggtgtttctccaaatcaacttttgtatgtgtc 152  Q
    ||||||||||||||  ||| || |||||||||||||||||||||| ||||    
T  41902616 aaaaacacctcattccatgatggttctccaaatcaacttttgtatatgtc 41902665  T

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Target: scaffold0005 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 262
Target Start/End: Complemental strand, 198120 - 197954
Alignment:
Q  95 gaaatcacaaaaacacctcattggatggtgtttctccaaatcaacttttgtatgtgtctgacctcacaaatgtcatatagaaccgtggattatgtatgct 194  Q
    |||||||||||||||| | ||| | ||||| ||||||||| | ||| ||||  ||||||  |||||| ||||| || | |||| |||||| ||| || ||    
T  198120 gaaatcacaaaaacacatgatttggtggtgcttctccaaagctactgttgtcggtgtcttccctcaccaatgttatgttgaacagtggatcatgcattct 198021  T
Q  195 atttctctgggaacatggttttattaatacatactatatgcaaaagcatcaataaactagcaagaaat 262  Q
     ||||| ||| ||||||||||| |||||| |||   ||| |||||||||  |||||||||||||||||    
T  198020 ctttctatggtaacatggtttt-ttaatatatatcttatacaaaagcatttataaactagcaagaaat 197954  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 262
Target Start/End: Original strand, 14619257 - 14619423
Alignment:
Q  95 gaaatcacaaaaacacctcattggatggtgtttctccaaatcaacttttgtatgtgtctgacctcacaaatgtcatatagaaccgtggattatgtatgct 194  Q
    |||||||||||||||| | ||| | ||||| ||||||||| | ||| ||||  ||||||  |||||| ||||| || | |||| |||||| ||| || ||    
T  14619257 gaaatcacaaaaacacatgatttggtggtgcttctccaaagctactgttgtcggtgtcttccctcaccaatgttatgttgaacagtggatcatgcattct 14619356  T
Q  195 atttctctgggaacatggttttattaatacatactatatgcaaaagcatcaataaactagcaagaaat 262  Q
     ||||| ||| ||||||||||| |||||| |||   ||| |||||||||  |||||||||||||||||    
T  14619357 ctttctatggtaacatggtttt-ttaatatatatcttatacaaaagcatttataaactagcaagaaat 14619423  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 262
Target Start/End: Complemental strand, 24676291 - 24676062
Alignment:
Q  31 ctttctcttaactttgacttgacacaaaatgacaaatgttgcctctgctggatgtaactcatgggaaatcacaaaaacacctcattggatggtgtttctc 130  Q
    |||| |||||| ||| | |||||||||| |||||||  |||||||| || ||| || || |||  |||||||||||| |||||||||| ||||| |||||    
T  24676291 ctttatcttaattttaatttgacacaaagtgacaaactttgcctcttctagatatatcttatgataaatcacaaaaatacctcattgg-tggtgcttctc 24676193  T
Q  131 caaatcaacttttgtatgtgtctgacctcacaaatgtcatatagaaccgtggattatgtatgctatttctctgggaacatggttttattaatacata-ct 229  Q
    ||| |  ||| ||||  ||  ||| |||||| |||||||| || | | |||||| ||| ||| | ||||| ||| ||||||| ||| ||||||||||  |    
T  24676192 caagtttactgttgtcagtccctg-cctcaccaatgtcatgtaaaccggtggatcatgcatgttttttctttggtaacatggcttt-ttaatacatattt 24676095  T
Q  230 atatgcaaaagcatcaataaactagcaagaaat 262  Q
     ||| |||||| |||||||||| |||| |||||    
T  24676094 ttatacaaaagtatcaataaaccagcatgaaat 24676062  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 26389508 - 26389463
Alignment:
Q  101 acaaaaacacctcattggatggtgtttctccaaatcaacttttgta 146  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||    
T  26389508 acaaaaacacctcattccatggtgtttctccaaatcaacttttgta 26389463  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 21933289 - 21933391
Alignment:
Q  50 tgacacaaaatgacaaatgttgcctctgctggatgtaactcatgggaaatcac---aaaaacacctcattggatggtgtttctccaaatcaacttttgta 146  Q
    |||||||||||||||||| ||  ||| | ||||| |  || ||| ||||||||   |||||||||||| | ||||||| |||||||||||||||||||||    
T  21933289 tgacacaaaatgacaaatcttatctccgttggatctttcttatgagaaatcacaaaaaaaacacctcactcgatggtggttctccaaatcaacttttgta 21933388  T
Q  147 tgt 149  Q
    |||    
T  21933389 tgt 21933391  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 21031531 - 21031581
Alignment:
Q  96 aaatcacaaaaacacctcattggatggtgtttctccaaatcaacttttgta 146  Q
    |||| ||||||||||||||||  |||||||||||||||||||| |||||||    
T  21031531 aaatgacaaaaacacctcattccatggtgtttctccaaatcaaattttgta 21031581  T

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