View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3632_high_13 (Length: 250)
Name: NF3632_high_13
Description: NF3632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3632_high_13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 250
Target Start/End: Original strand, 23152074 - 23152320
Alignment:
| Q |
4 |
agtgagatgaacataaaacaatgataagagagtataaatgatggttgttgcttactgttgttgttgtaactgcaaacagagtcaggagtatcagcaaagt |
103 |
Q |
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| T |
23152074 |
agtgaaatgaacataaaacaatgataggagaatataaaagtttgttgctgcttacttttgttattgtaactgcaaacagagtcaggagtatcagcaaagt |
23152173 |
T |
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| Q |
104 |
gcaaagcagaagaccaaggatagataaatctaacatgatctgcccatgaacacttgctagataaatcattatttgcagattctggcaacaattttttcac |
203 |
Q |
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| T |
23152174 |
gcaaagcagacgaccaaggatagataaacctcacatgatctgcccatgaacacttgctagataaatcattatttgcagattctggcagcaattttttcac |
23152273 |
T |
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| Q |
204 |
agcctttgcagctgcgtcgctaagtcgagcctgttatcacaaaatca |
250 |
Q |
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| T |
23152274 |
agcctttgcagctgcgtcgctaagtcgagcctgttatcacaaaatca |
23152320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 217
Target Start/End: Original strand, 23135661 - 23135811
Alignment:
| Q |
67 |
ttgtaactgcaaacagagtcaggagtatcagcaaagtgcaaagcagaagaccaaggatagataaatctaacatgatctgcccatgaacacttgctagata |
166 |
Q |
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| T |
23135661 |
ttgtaagtgcaaacattgtcaggtgtatcagcaaagtgtagaggggaagaccactgaaagataaacctcacatgatctgcccatgaacacttgctagata |
23135760 |
T |
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| Q |
167 |
aatcattatttgcagattctggcaacaattttttcacagcctttgcagctg |
217 |
Q |
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| T |
23135761 |
aatcattgtttgcagattctggcaacaattttttcacagccttagcagctg |
23135811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 49866626 - 49866654
Alignment:
| Q |
91 |
gtatcagcaaagtgcaaagcagaagacca |
119 |
Q |
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| T |
49866626 |
gtatcagcaaagtgcaaagcagaagacca |
49866654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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