View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3632_high_18 (Length: 216)
Name: NF3632_high_18
Description: NF3632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3632_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 44006653 - 44006837
Alignment:
| Q |
20 |
aataaagtactatcccctctgttctatgactaggtcttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttat |
119 |
Q |
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| T |
44006653 |
aataaagtactatcccctctgttctatgactaggtcttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttat |
44006752 |
T |
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| Q |
120 |
attcataagccacattaaagcttgctttaaacccatgctaccacctctcgaggactcggtttactaacgttccacacaggttctg |
204 |
Q |
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| T |
44006753 |
attcataagccacattaaagcttgctttaaacccatgctaccacctctcgaggactcggtttactaacgttccacacaggttctg |
44006837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 24147094 - 24146980
Alignment:
| Q |
39 |
tgttctatgactaggtcttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataag-ccacattaa |
137 |
Q |
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| T |
24147094 |
tgttgtatgacttggtct-cccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaaattcataagaacacagtag |
24146996 |
T |
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| Q |
138 |
agcttgctttaaaccc |
153 |
Q |
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| T |
24146995 |
agcttgctttagaccc |
24146980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 24152533 - 24152445
Alignment:
| Q |
39 |
tgttctatgactaggtcttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataag |
128 |
Q |
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| T |
24152533 |
tgttgtatgacttggtct-cccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaaattcataag |
24152445 |
T |
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