View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3632_high_2 (Length: 425)
Name: NF3632_high_2
Description: NF3632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3632_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Complemental strand, 4933754 - 4933352
Alignment:
| Q |
19 |
agttgtccatactatgtatcaattgtcataattgttaaaaa-tgacacttattttaaaacagaaaatatcatacctcagctatgatggttatgtcaagtt |
117 |
Q |
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| T |
4933754 |
agttgtccatactatgtatcaattgtcataattgttaaaaaatgacacttattttaaaacagaaaatatcatacctcagctatgatggttatgtcaagtt |
4933655 |
T |
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| Q |
118 |
ttgtggttccaaatagcaatgcactactactagtgactgatagatgaagattctctatctcttggattatgttcatcaatgcacccttatgtttctcaca |
217 |
Q |
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| T |
4933654 |
ttgtggttccaaatagcaatgcactactactagtgactgatagatgaagattctctatctcttggattatgttcatcaatgcacccttatgtttctcaca |
4933555 |
T |
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| Q |
218 |
atggacacgaatcagcacgtttttctctgacactcttgcctcaacttcaggcagtgacctacttggttttgaggtttgagtgtgacaacaattaccatag |
317 |
Q |
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| T |
4933554 |
atggacacgaatcagcacgtttttctctgacactcttgcctcaacttcaggcagtgacctacttggttttgaggtgtgagtgtgacaacaattaccatag |
4933455 |
T |
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| Q |
318 |
ccagaatttgatgaggtgtctgaaacatcttcatctgaagaatatgactttgtcttctcaacatataccatagacacagattctacgttattcctttgct |
417 |
Q |
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| T |
4933454 |
ccagaatttgatgaggtttctgaaacatcttcatctgaagaatatgactttgtcttctcaacatataccatagacacagattctacgttattcttttggt |
4933355 |
T |
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| Q |
418 |
tct |
420 |
Q |
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| T |
4933354 |
tct |
4933352 |
T |
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