View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3632_high_4 (Length: 391)
Name: NF3632_high_4
Description: NF3632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3632_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 11388527 - 11388900
Alignment:
| Q |
1 |
caaaaatttacttgttatattcattaaataaataaaagattgatgtattttgtctatcatacaaaacaaatacattaattattaaaaaagatctaannnn |
100 |
Q |
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| T |
11388527 |
caaaaatttactttttatattcattaaataattaaaaggctgatatattttgtctatcatacaaatcaaatacattaattattaaaaaa-atctattttt |
11388625 |
T |
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| Q |
101 |
nnnnngtttataattgtgatcggaaaaaatatttaacaagctctttttaccaaagattacatacaaagtatttaatacatagtagcattgtcaagaatga |
200 |
Q |
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| T |
11388626 |
tttttatttataattgagaccggaaagaatatttaacaagctctttttaccaaagatcacatacgaagtatttaatacatagtagcattgtcaacaatga |
11388725 |
T |
|
| Q |
201 |
aactacaccaatctaatcgagtcacattatcaacacttcatattttataatacatgacacacaaaccattgcattactacaactcaagagcttctaatta |
300 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11388726 |
aactacaccgatctaatcgaatcacattatcaacacttcatatttcataatacatgacacataaaccattgcattactacaactcaagagcttctaatta |
11388825 |
T |
|
| Q |
301 |
aaaatcttttttgacggaagcttacccattctataaaataaaagtctcaaacaccaaccaaattacatacaaaat |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11388826 |
aaaatcttttttgacggaagcttacccattctataaaataaaagtctcaaacaccaaccaaattacatacaaaat |
11388900 |
T |
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