View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3632_high_6 (Length: 350)

Name: NF3632_high_6
Description: NF3632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3632_high_6
NF3632_high_6
[»] chr2 (10 HSPs)
chr2 (19-185)||(35019588-35019750)
chr2 (19-185)||(35029078-35029238)
chr2 (227-338)||(35019435-35019546)
chr2 (265-338)||(35033152-35033225)
chr2 (281-342)||(35008895-35008956)
chr2 (281-342)||(35036977-35037038)
chr2 (278-338)||(35026156-35026216)
chr2 (279-331)||(34998928-34998980)
chr2 (276-338)||(36288442-36288504)
chr2 (265-335)||(35012412-35012482)
[»] chr4 (2 HSPs)
chr4 (277-341)||(30595269-30595333)
chr4 (277-341)||(30612617-30612681)


Alignment Details
Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 35019750 - 35019588
Alignment:
Q  19 gaactaactattttatttgtttttgaataagttagtgaaaccaactaggttgcacaatattttgtagtattctctgtctttctcatacatagggatatat 118  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  35019750 gaactaactattttatttatttttgaataagttagtgaaaccaactaggttgcacaatattttgtagtattctctgtctttct----catagggatatat 35019655  T
Q  119 gcatcaggtccacatttttcatgatacaccaaatcttaaaaatgaaagaacgtaattaactctcact 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35019654 gcatcaggtccacatttttcatgatacaccaaatcttaaaaatgaaagaacgtaattaactctcact 35019588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 35029238 - 35029078
Alignment:
Q  19 gaactaactattttatttgtttttgaataagttagtgaaaccaactaggttgcacaatattttgtagtattctctgtctttctcatacatagggatatat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    |||||||  ||||    
T  35029238 gaactaactattttatttgtttttgaataagttagtgaaaccaactaggttgcacaatattttgcagtattctctgtctttct----cataggg--atat 35029145  T
Q  119 gcatcaggtccacatttttcatgatacaccaaatcttaaaaatgaaagaacgtaattaactctcact 185  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||    
T  35029144 gcatcaggtccacatttttaatgatacaccaaatcttaaaaatgaaataacttaattaactctcact 35029078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 227 - 338
Target Start/End: Complemental strand, 35019546 - 35019435
Alignment:
Q  227 ttgtagcatagtttatttcattacattcaatagcagtaatggatgctccttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaac 326  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35019546 ttgtggcatagtttatttcattacattcaatagcagtaatggatgctccttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaac 35019447  T
Q  327 tccatatcttca 338  Q
    ||||||||||||    
T  35019446 tccatatcttca 35019435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 265 - 338
Target Start/End: Original strand, 35033152 - 35033225
Alignment:
Q  265 atggatgctccttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttca 338  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35033152 atggatgctcctcctcctttacacatagcaatgtttccatggtttgctatgggacacttaactccatatcttca 35033225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 35008895 - 35008956
Alignment:
Q  281 ctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttcatctc 342  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35008895 ctttgcacatagcaatgtttccatggtttgcaatgggacacttaactccatatcttcatctc 35008956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 281 - 342
Target Start/End: Complemental strand, 35037038 - 35036977
Alignment:
Q  281 ctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttcatctc 342  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35037038 ctttgcacatagcaatgtttccatggtttgcaatgggacacttaactccatatcttcatctc 35036977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 35026156 - 35026216
Alignment:
Q  278 ctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttca 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  35026156 ctcctttgcacatagcaatgtttccatggtttgctatgggacacttcaccccatatcttca 35026216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 34998980 - 34998928
Alignment:
Q  279 tcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccat 331  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34998980 tcctttgcacatagcaatgtttccatggtttgctatgggacactcaactccat 34998928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 36288442 - 36288504
Alignment:
Q  276 ttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttca 338  Q
    |||| |||||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||    
T  36288442 ttcttctttgcacatagcaatgtctccatggtttgcaatgggacacctaattccatatcttca 36288504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 335
Target Start/End: Complemental strand, 35012482 - 35012412
Alignment:
Q  265 atggatgctccttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatct 335  Q
    |||||||||| | ||||| |||| ||| |||||||||||||||||||||||||||| || || ||||||||    
T  35012482 atggatgctcttcctcctatgcatatatcaatgtttccatggtttgctatgggacatttcaccccatatct 35012412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 30595333 - 30595269
Alignment:
Q  277 tctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttcatct 341  Q
    |||||||| ||||||||||||| |||||||||||| ||||| |||  ||||||||  ||||||||    
T  30595333 tctcctttacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcatct 30595269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 30612681 - 30612617
Alignment:
Q  277 tctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttcatct 341  Q
    |||||||| ||||||||||||| |||||||||||| ||||| |||  ||||||||  ||||||||    
T  30612681 tctcctttacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcatct 30612617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University