View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3632_high_9 (Length: 289)
Name: NF3632_high_9
Description: NF3632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3632_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 109 - 269
Target Start/End: Original strand, 8837909 - 8838073
Alignment:
| Q |
109 |
tacaatttctaaagttattatgtatatacttttcctctgtttttgttggtggacac----acactcatgtatgtatattttactcttttttaacggaaaa |
204 |
Q |
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| T |
8837909 |
tacaatttctaaagttattatgtatatacttttcctctgtttttgttggtggacacacacacactcatgtatgtatattttactcttttttaacggaaaa |
8838008 |
T |
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| Q |
205 |
tgttaatgattatcctaaagatactgtttaaggattttagatgtcaaccacgttgggatatttcg |
269 |
Q |
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| T |
8838009 |
tgttaatgattatcctaaagatactatttaaagactttagatatcaaccacgttgggatatttcg |
8838073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 8837660 - 8837800
Alignment:
| Q |
1 |
attgtgggtgcatacatttcaaaactcaaatatacttgcaactttttgacatatgagcggcaattatgatattatattcaagcatttgtaatataattan |
100 |
Q |
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| T |
8837660 |
attgtgggtgtatacatttcaaaactcaaatatccttgcaactttttaacatatgagatgcaattatgatattatattcaagcatttgtaatataattat |
8837759 |
T |
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| Q |
101 |
nnnnnnggtacaatttctaaagttattatgtatatactttt |
141 |
Q |
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| T |
8837760 |
ttttttggtacaatttctaaagttattatgtatatactttt |
8837800 |
T |
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