View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3632_low_1 (Length: 497)

Name: NF3632_low_1
Description: NF3632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3632_low_1
NF3632_low_1
[»] chr1 (3 HSPs)
chr1 (213-480)||(32212270-32212530)
chr1 (46-116)||(32211999-32212068)
chr1 (125-175)||(32212219-32212269)
[»] chr7 (2 HSPs)
chr7 (42-89)||(43439540-43439586)
chr7 (46-80)||(36746169-36746203)
[»] chr5 (1 HSPs)
chr5 (46-115)||(10142689-10142757)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 213 - 480
Target Start/End: Original strand, 32212270 - 32212530
Alignment:
Q  213 attttgatgagaccccccacagaagttgtaacaaatacaacacgtgtagtggaaataacacaccatttattcctaagaaggtaaacttgagatttcacgt 312  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32212270 attttgatgagaccccc-acacaagttgtaacaaatacaacacgtgtagtggaaataacacaccatttattcctaagaaggtaaacttgagatttcacgt 32212368  T
Q  313 gaacttgtgtggtgtgagaaactttcatgctcatgcaatgaaccacacactgagacgttgaataaaaaactagatatagaacatgctcatacatattatt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32212369 gaacttgtgtggtgtgagaaactttcatgctcatgcaatgaaccacacactgagacgttgaataaaaaactagatatagaacatgctcatacatattatt 32212468  T
Q  413 aaatgtaccttgaaattgaatggaactacactacactagttgccttccatggtcacgtgtcctctgtg 480  Q
    |||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32212469 aaatgtacc------ttgaatggaactacactacactagttgccttccatggtcacgtgtcctctgtg 32212530  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 32211999 - 32212068
Alignment:
Q  46 atgttttgaactaaaaagacacaagtgaaaattgatttttcattnnnnnnncattgttgtgtttatttagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  32211999 atgttttgaactaaaaagacacaagtgaaaattgatttttcatt-aaaaaacattgttgtgtttatttagc 32212068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 32212219 - 32212269
Alignment:
Q  125 ttctttctagtgaaaattgaaattggatcttaatatagtataacagctttg 175  Q
    ||||||||||||||||||||||||||||| |||||| |||||| |||||||    
T  32212219 ttctttctagtgaaaattgaaattggatcctaatattgtataagagctttg 32212269  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 43439540 - 43439586
Alignment:
Q  42 aatgatgttttgaactaaaaagacacaagtgaaaattgatttttcatt 89  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43439540 aatgatgtttt-aactaaaaagacacaagtgaaaattgatttttcatt 43439586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 36746203 - 36746169
Alignment:
Q  46 atgttttgaactaaaaagacacaagtgaaaattga 80  Q
    |||||||||||||||||||||||||||||||||||    
T  36746203 atgttttgaactaaaaagacacaagtgaaaattga 36746169  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 10142689 - 10142757
Alignment:
Q  46 atgttttgaactaaaaagacacaagtgaaaattgatttttcattnnnnnnncattgttgtgtttatttag 115  Q
    |||||||||||||||| |||||||||||||||||||||||||||        ||||||||||||||||||    
T  10142689 atgttttgaactaaaa-gacacaagtgaaaattgatttttcattaaaaaaatattgttgtgtttatttag 10142757  T

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