View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3632_low_11 (Length: 265)

Name: NF3632_low_11
Description: NF3632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3632_low_11
NF3632_low_11
[»] chr3 (6 HSPs)
chr3 (56-250)||(16860113-16860306)
chr3 (108-250)||(36100028-36100170)
chr3 (103-250)||(42374267-42374415)
chr3 (181-250)||(4330241-4330310)
chr3 (190-247)||(21336080-21336137)
chr3 (201-240)||(21626764-21626803)
[»] chr4 (2 HSPs)
chr4 (106-250)||(14199782-14199926)
chr4 (159-250)||(36040117-36040208)
[»] chr7 (3 HSPs)
chr7 (103-250)||(46741946-46742093)
chr7 (103-250)||(46372230-46372376)
chr7 (179-250)||(29054293-29054365)
[»] chr1 (7 HSPs)
chr1 (103-250)||(35567335-35567482)
chr1 (103-250)||(37382573-37382719)
chr1 (103-250)||(41768643-41768789)
chr1 (103-250)||(50986388-50986534)
chr1 (103-247)||(4296312-4296455)
chr1 (179-250)||(11166316-11166387)
chr1 (208-250)||(10724825-10724867)
[»] chr5 (5 HSPs)
chr5 (103-250)||(34985895-34986042)
chr5 (159-250)||(20406961-20407052)
chr5 (181-250)||(2852561-2852630)
chr5 (181-250)||(2842418-2842487)
chr5 (172-209)||(42867091-42867128)
[»] chr6 (2 HSPs)
chr6 (103-250)||(17003197-17003343)
chr6 (103-250)||(25460996-25461142)
[»] chr2 (1 HSPs)
chr2 (103-247)||(13099081-13099224)
[»] chr8 (2 HSPs)
chr8 (164-250)||(13439052-13439138)
chr8 (175-250)||(44842587-44842662)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 56 - 250
Target Start/End: Original strand, 16860113 - 16860306
Alignment:
Q  56 gctgttctatagatttttgttatcaatctgtagtatnnnnnnnnnnncagacttttttatcagtagcatcagaactaaaaaagattcatctgcaaaagaa 155  Q
    ||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16860113 gctgttctatagatttttgttatcaatctgtagtataaaaaaaaaa-cagacttttttatcagtagcatcagaactaaaaaagattcatctacaaaagaa 16860211  T
Q  156 atttttacatctctagaaataaaacaaaatcacatccaatttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16860212 atttttacatctctagaaataaaacaaaatcacatccaatttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 16860306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 108 - 250
Target Start/End: Complemental strand, 36100170 - 36100028
Alignment:
Q  108 ttttttatcagtagcatcagaactaaaaaagattcatctgcaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatttcatatttgta 207  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36100170 ttttttatcagtagcatcagaactaaaaaagattcatctacaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatttcatatttgta 36100071  T
Q  208 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    | |||||||||||||||||||||||||||||||||||||||||    
T  36100070 tagttgttgttgcatgtaatggaaacaaaatatgtaaagaact 36100028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 42374415 - 42374267
Alignment:
Q  103 cagacttttttatcagtagcatcagaactaaaaaagattcatctgcaaaagaaattt-ttacatctctagaaataaaacaaaatcacatccaatttcata 201  Q
    ||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||    ||||||||||||||||||||||||||||||||||||||||||    
T  42374415 cagacttttttatcagtagcatcggaactaaaaaaggttcatctacaaaaaaaaaaaattacatctctagaaataaaacaaaatcacatccaatttcata 42374316  T
Q  202 tttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42374315 tttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 42374267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 4330241 - 4330310
Alignment:
Q  181 aaaatcacatccaatttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4330241 aaaattacatccaatttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 4330310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 21336080 - 21336137
Alignment:
Q  190 tccaatttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaaga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21336080 tccaatttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaaga 21336137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 21626764 - 21626803
Alignment:
Q  201 atttgtattgttgttgttgcatgtaatggaaacaaaatat 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21626764 atttgtattgttgttgttgcatgtaatggaaacaaaatat 21626803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 106 - 250
Target Start/End: Original strand, 14199782 - 14199926
Alignment:
Q  106 acttttttatcagtagcatcagaactaaaaaagattcatctgcaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatttcatatttg 205  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14199782 acttttttatcagtagcatcagaactaaaaaagattcatctacaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatttcatatttg 14199881  T
Q  206 tattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14199882 tattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 14199926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 36040208 - 36040117
Alignment:
Q  159 tttacatctctagaaataaaacaaaatcacatccaatttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36040208 tttacatctctagaaataaaacaaaatcacatccaatttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 36040117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 46742093 - 46741946
Alignment:
Q  103 cagacttttttatcagtagcatcagaactaaaaaagattcatctgcaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatttcatat 202  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46742093 cagacttttttatcagtagcatcagaactaaaaaagattcatctacaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatttcatat 46741994  T
Q  203 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46741993 ttgtactgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 46741946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 46372376 - 46372230
Alignment:
Q  103 cagacttttttatcagtagcatcagaactaaaaaagattcatctgcaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatttcatat 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  46372376 cagacttttttatcagtagcatcggaactaaaaaagattcatctacaaaaaaaaattt-acatctctagaaataaaacaaaatcacatccaatttcatat 46372278  T
Q  203 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46372277 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 46372230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 29054365 - 29054293
Alignment:
Q  179 acaaaatcacatccaattt-catatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29054365 acaacatcacatccaattttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 29054293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 35567335 - 35567482
Alignment:
Q  103 cagacttttttatcagtagcatcagaactaaaaaagattcatctgcaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatttcatat 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35567335 cagacttttttatcagtagcatcggaactaaaaaagattcatctacaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatttcatat 35567434  T
Q  203 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35567435 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 35567482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 37382573 - 37382719
Alignment:
Q  103 cagacttttttatcagtagcatcagaactaaaaaagattcatctgcaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatttcatat 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  37382573 cagacttttttatcagtagcatcggaactaaaaaagattcatctacaaaaaaaaattt-acatctctagaaataaaacaaaatcacatccaatttcatat 37382671  T
Q  203 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37382672 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 37382719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 41768643 - 41768789
Alignment:
Q  103 cagacttttttatcagtagcatcagaactaaaaaagattcatctgcaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatttcatat 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  41768643 cagacttttttatcagtagcatcggaactaaaaaagattcatctacaaaaaaaaattt-acatctctagaaataaaacaaaatcacatccaatttcatat 41768741  T
Q  203 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41768742 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 41768789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 50986388 - 50986534
Alignment:
Q  103 cagacttttttatcagtagcatcagaactaaaaaagattcatctgcaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatttcatat 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  50986388 cagacttttttatcagtagcatcggaactaaaaaagattcatctacaaaaaaaaattt-acatctctagaaataaaacaaaatcacatccaatttcatat 50986486  T
Q  203 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  50986487 ttgttttgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 50986534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 103 - 247
Target Start/End: Complemental strand, 4296455 - 4296312
Alignment:
Q  103 cagacttttttatcagtagcatcagaactaaaaaagattcatctgcaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatttcatat 202  Q
    ||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  4296455 cagacttttttatcagtagcatcggaactaaaagagattcatctacaaaaaaaaattt-acatctctagaaataaaacaaaatcacatccaatttcatat 4296357  T
Q  203 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaaga 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4296356 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaaga 4296312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 11166387 - 11166316
Alignment:
Q  179 acaaaatcacatccaatttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11166387 acaacatcacatccaatttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 11166316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 10724825 - 10724867
Alignment:
Q  208 ttgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    ||||||||||||||||||||| ||||| |||||||||||||||    
T  10724825 ttgttgttgttgcatgtaatgaaaacataatatgtaaagaact 10724867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 34985895 - 34986042
Alignment:
Q  103 cagacttttttatcagtagcatcagaactaaaaaagattcatctgcaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatttcatat 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||   |||||||||||||||||||||||||||||||||||||||||||    
T  34985895 cagacttttttatcagtagcatcggaactaaaaaagattcatctacaaaaaaaaaaattacatctctagaaataaaacaaaatcacatccaatttcatat 34985994  T
Q  203 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  34985995 ttgtattgttgttgctgcatgtaatggaaacaaaatatgtaaagaact 34986042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 20407052 - 20406961
Alignment:
Q  159 tttacatctctagaaataaaacaaaatcacatccaatttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20407052 tttacatctctagaaataaaacaaaatcacatccaatttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 20406961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 2852630 - 2852561
Alignment:
Q  181 aaaatcacatccaatttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2852630 aaaatcacatccaatttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 2852561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 2842487 - 2842418
Alignment:
Q  181 aaaatcacatccaatttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2842487 aaaatcacatccaatttcagatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 2842418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 42867128 - 42867091
Alignment:
Q  172 aaataaaacaaaatcacatccaatttcatatttgtatt 209  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  42867128 aaatagaacaaaatcacatccaatttcatatttttatt 42867091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 17003197 - 17003343
Alignment:
Q  103 cagacttttttatcagtagcatcagaactaaaaaagattcatctgcaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatttcatat 202  Q
    ||||||||||||||||||||||| |||||||||||||||||| | ||||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||    
T  17003197 cagacttttttatcagtagcatcggaactaaaaaagattcatgtacaaaaaaaaattt-acatctctagacataaaacaaaatcacatccaatttcatat 17003295  T
Q  203 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17003296 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 17003343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 25460996 - 25461142
Alignment:
Q  103 cagacttttttatcagtagcatcagaactaaaaaagattcatctgcaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatttcatat 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||      |||||| |||||||||||||||||||||||||||||||||||||||    
T  25460996 cagacttttttatcagtagcatcggaactaaaaaagattcatctacaattttt-tttttatatctctagaaataaaacaaaatcacatccaatttcatat 25461094  T
Q  203 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25461095 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 25461142  T

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Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 103 - 247
Target Start/End: Original strand, 13099081 - 13099224
Alignment:
Q  103 cagacttttttatcagtagcatcagaactaaaaaagattcatctgcaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatttcatat 202  Q
    |||||||||||||| |||||||| |||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||    
T  13099081 cagacttttttatcggtagcatcggaactaaaaaagattcatctacaaaaaaaaattt-acatctctagaaataaaacaaaatcacatccaatttcaaat 13099179  T
Q  203 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaaga 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13099180 ttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaaga 13099224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 13439052 - 13439138
Alignment:
Q  164 atctctagaaataaaacaaaatcacatccaatttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13439052 atctctagaaataaaacaaaatcacatccaatttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 13439138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 44842662 - 44842587
Alignment:
Q  175 taaaacaaaatcacatccaatttcatatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaagaact 250  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44842662 taaaacaaaatcacatccaatttcaaatttgtattgttgttgttgcatgtaatggaaacaaaatatgtaaggaact 44842587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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