View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3632_low_12 (Length: 250)

Name: NF3632_low_12
Description: NF3632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3632_low_12
NF3632_low_12
[»] chr3 (2 HSPs)
chr3 (1-240)||(16859353-16859592)
chr3 (157-240)||(36100162-36100242)
[»] chr7 (2 HSPs)
chr7 (2-240)||(46742109-46742347)
chr7 (1-37)||(46372677-46372713)
[»] chr4 (2 HSPs)
chr4 (1-240)||(14198974-14199211)
chr4 (1-37)||(36040245-36040281)
[»] chr1 (6 HSPs)
chr1 (6-68)||(30217215-30217277)
chr1 (1-37)||(11166428-11166464)
chr1 (1-37)||(4296765-4296801)
chr1 (1-37)||(37382116-37382152)
chr1 (1-37)||(41768344-41768380)
chr1 (1-37)||(50986105-50986141)
[»] chr8 (2 HSPs)
chr8 (1-37)||(37742525-37742561)
chr8 (1-37)||(44842863-44842899)
[»] chr6 (1 HSPs)
chr6 (1-37)||(27830974-27831010)
[»] chr5 (2 HSPs)
chr5 (1-37)||(20407180-20407216)
chr5 (1-37)||(34985448-34985484)
[»] chr2 (1 HSPs)
chr2 (1-37)||(13098790-13098826)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 16859592 - 16859353
Alignment:
Q  1 ttgatataattgtaaaattgtgttaggactgtttttggatatgtattctttctttaacttctcatctttatacattttcttgttttgcctcatatgtgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16859592 ttgatataattgtaaaattgtgttaggactgtttttggatatgtattctttcttttacttctcatctttatacattttcttgttttgcctcatatgtgat 16859493  T
Q  101 gttgaagattctatagtttgttaaatatgtcatatgaagctcaacaataaaatgaagataaaaaattaaagaaataatgagtttaatgatcattttcatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16859492 gttgaagattctatagtttgttaaatatgtcatatgaagctcaacaataaaatgaagataaaaaattaaagaaataatgagtttaatgatcattttcatg 16859393  T
Q  201 gttttgtaaagatgaaaagaaattattttacctgtctgtg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16859392 gttttgtaaagatgaaaagaaattattttacctgtctgtg 16859353  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 36100162 - 36100242
Alignment:
Q  157 gataaaaaattaaagaaataatgagtttaatgatcattttcatggttttgtaaagatgaaaagaaattattttacctgtctgtg 240  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36100162 gataaaaaattaaagaaat---gagtttaatgatcattttcatggttttgtaaagatgaaaagaaattattttacctgtctgtg 36100242  T

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Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 46742109 - 46742347
Alignment:
Q  2 tgatataattgtaaaattgtgttaggactgtttttggatatgtattctttctttaacttctcatctttatacattttcttgttttgcctcatatgtgatg 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46742109 tgatataattgtaaaattgtgttaggactgtttttggatatgtattatttctttaacttctcatctttatacattttcttgttttgcctcatatgtgatg 46742208  T
Q  102 ttgaagattctatagtttgttaaatatgtcatatgaagctcaacaataaaatgaagataaaaaattaaagaaataatgagtttaatgatcattttcatgg 201  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  46742209 ttgaagattctgtagtttgttaaatatgtcatatgaagctcaacaataaaatgaagataaaaaattaaagaaataatgagtttaatgatcattttcatga 46742308  T
Q  202 ttttgtaaagatgaaaagaaattattttacctgtctgtg 240  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46742309 ttttgtaaagatgaaaagaaattattttacctgtctgtg 46742347  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 46372677 - 46372713
Alignment:
Q  1 ttgatataattgtaaaattgtgttaggactgtttttg 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  46372677 ttgatataattataaaattgtgttaggactgtttttg 46372713  T

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Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 14199211 - 14198974
Alignment:
Q  1 ttgatataattgtaaaattgtgttaggactgtttttggatatgtattctttctttaacttctcatctttatacattttcttgttttgcctcatatgtgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14199211 ttgatataattgtaaaattgtgttaggactgtttttggatatgtattctttcttttacttctcatctttatacattttcttgttttgcctcatatgtgat 14199112  T
Q  101 gttgaagattctatagtttgttaaatatgtcatatgaagctcaacaataaaatgaagataaaaaattaaagaaataatgagtttaatgatcattttcatg 200  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14199111 gttgaagattctatagtttgttaa--atgtcatatgaagctcaacaataaaatgaagatgaaaaattaaagaaataatgagtttaatgatcattttcatg 14199014  T
Q  201 gttttgtaaagatgaaaagaaattattttacctgtctgtg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14199013 gttttgtaaagatgaaaagaaattattttacctgtctgtg 14198974  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36040245 - 36040281
Alignment:
Q  1 ttgatataattgtaaaattgtgttaggactgtttttg 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  36040245 ttgatataattttaaaattgtgttaggactgtttttg 36040281  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 30217277 - 30217215
Alignment:
Q  6 ataattgtaaaattgtgttaggactgtttttggatatgtattctttctttaacttctcatctt 68  Q
    |||||||||||||| |||||||||||| |||||||||||||| | ||| ||||| ||||||||    
T  30217277 ataattgtaaaattatgttaggactgtgtttggatatgtattttctctctaactactcatctt 30217215  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11166428 - 11166464
Alignment:
Q  1 ttgatataattgtaaaattgtgttaggactgtttttg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  11166428 ttgatataattgtaaaattgtgttaggactgtttttg 11166464  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4296765 - 4296801
Alignment:
Q  1 ttgatataattgtaaaattgtgttaggactgtttttg 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  4296765 ttgatataattttaaaattgtgttaggactgtttttg 4296801  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37382152 - 37382116
Alignment:
Q  1 ttgatataattgtaaaattgtgttaggactgtttttg 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  37382152 ttgatataattttaaaattgtgttaggactgtttttg 37382116  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41768380 - 41768344
Alignment:
Q  1 ttgatataattgtaaaattgtgttaggactgtttttg 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  41768380 ttgatataattttaaaattgtgttaggactgtttttg 41768344  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 50986141 - 50986105
Alignment:
Q  1 ttgatataattgtaaaattgtgttaggactgtttttg 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  50986141 ttgatataattttaaaattgtgttaggactgtttttg 50986105  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37742561 - 37742525
Alignment:
Q  1 ttgatataattgtaaaattgtgttaggactgtttttg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  37742561 ttgatataattgtaaaattgtgttaggactgtttttg 37742525  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 44842863 - 44842899
Alignment:
Q  1 ttgatataattgtaaaattgtgttaggactgtttttg 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  44842863 ttgatataattttaaaattgtgttaggactgtttttg 44842899  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27830974 - 27831010
Alignment:
Q  1 ttgatataattgtaaaattgtgttaggactgtttttg 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  27830974 ttgatataattttaaaattgtgttaggactgtttttg 27831010  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20407180 - 20407216
Alignment:
Q  1 ttgatataattgtaaaattgtgttaggactgtttttg 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  20407180 ttgatataattttaaaattgtgttaggactgtttttg 20407216  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34985484 - 34985448
Alignment:
Q  1 ttgatataattgtaaaattgtgttaggactgtttttg 37  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  34985484 ttgatataattttaaaattgtgttaagactgtttttg 34985448  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13098826 - 13098790
Alignment:
Q  1 ttgatataattgtaaaattgtgttaggactgtttttg 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  13098826 ttgatataattttaaaattgtgttaggactgtttttg 13098790  T

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