View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3632_low_14 (Length: 249)
Name: NF3632_low_14
Description: NF3632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3632_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 11388257 - 11388435
Alignment:
| Q |
9 |
cacagaaagagacgaattcatttgatggtaacgtatgttatggagtattttttgtgtttatctatcatcaaataacgtcaatcatattatcgcaaattaa |
108 |
Q |
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| T |
11388257 |
cacagaaagagacaaattcatttgatggtagcgtatgttatagagtattttttgtgtttatctatcatcaaataacgtcaatcaaattatcgcaaattaa |
11388356 |
T |
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| Q |
109 |
atcaaattaatagttatgggacctagagtacatatcaaaaataagtatttagagaaaaatcaaagtgtgtggggctgac |
187 |
Q |
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| T |
11388357 |
atcaaattaacggctatgggacctagagtacatatcaaaaataagtatttagagaaaaatcaaagtgtgtggggctgac |
11388435 |
T |
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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 11388451 - 11388489
Alignment:
| Q |
211 |
aaggaagttgtcctagatatttatttgcttaaaacaaaa |
249 |
Q |
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| T |
11388451 |
aaggaacttgtcctagatatttatttgcttaaaataaaa |
11388489 |
T |
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