View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3632_low_16 (Length: 245)
Name: NF3632_low_16
Description: NF3632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3632_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 23152494 - 23152719
Alignment:
| Q |
1 |
tgtttgactgcgtgaatgtatgatcccttaacagtggtaaattctacttcaaaatattgaaagataacaaggtaaaggcaggatcctgacctgagcaatc |
100 |
Q |
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| T |
23152494 |
tgtttgactgcgtgaatgtatgatcccctaacagtggtaaattctacttcaaaatattgaaagataacaaggtaaaggcaggatcctgacctgagcaatc |
23152593 |
T |
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| Q |
101 |
ttacaaacaatgacatgcccatcttctccccattctttggtattttgaaccaaaagcataaatgaaactatggtcactagtacaattttgtaacaatcca |
200 |
Q |
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| T |
23152594 |
ttacaaacaatgacatgcccatcttctccccattctttggtattttgaaccaaaagcataaatgaaactatggtcactagtacaattttgtaacaatcca |
23152693 |
T |
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| Q |
201 |
tagtactttactctattagtgcacaa |
226 |
Q |
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| T |
23152694 |
tagtactttactctattagtgcacaa |
23152719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 23136062 - 23136183
Alignment:
| Q |
89 |
acctgagcaatcttacaaacaatgacatgcccatcttctccccattctttggtattttgaaccaaaagcataaatgaaactatggtcactagtacaattt |
188 |
Q |
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| T |
23136062 |
acctgagcaatcttacaaacaatggcatgtccatcatctccccacccttgtgtattttggatcaaaagaaggaatgaaactatggctacaagtgcaattc |
23136161 |
T |
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| Q |
189 |
tgtaacaatccatagtacttta |
210 |
Q |
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| T |
23136162 |
tataacaacccattgcacttta |
23136183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 23292681 - 23292597
Alignment:
| Q |
89 |
acctgagcaatcttacaaacaatgacatgcccatcttctccccattctttggtattttgaaccaaaagcataaatgaaactatgg |
173 |
Q |
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| T |
23292681 |
acctgagcaatcttacaaacagtgaaatgtccttcctctccccatccttgtgtgtttggaagcaaaagcatgaaagaaactatgg |
23292597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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