View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3632_low_17 (Length: 244)
Name: NF3632_low_17
Description: NF3632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3632_low_17 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 244
Target Start/End: Original strand, 24146972 - 24147208
Alignment:
| Q |
7 |
gaagcatagggtctaaagcaagctctactgtgttcttatgaatttaggcttctgcaaagtgtttattgaactagattccaaactactcgtggacggcatg |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24146972 |
gaagcatggggtctaaagcaagctctactgtgttcttatgaatttaggcttctgcaaagtgtttattgaactagattccaaactactcgtggacggcatg |
24147071 |
T |
|
| Q |
107 |
gcggggagaccaagtcatacaacagagtgggggagtattttatgtgcttgcaaaacatttttatattctttaccaaactttcagataagttttcttcgga |
206 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
24147072 |
gcggg-agaccaagtcatacaacaaagtggggtagtattttatgtgcttgcaaaacatttttatattctttaccaaacttacggataagttttcttcgga |
24147170 |
T |
|
| Q |
207 |
gacaaacaaacaatgttgctcaccttctagctagtggc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24147171 |
gacaaacaaacaatgttgctcaccttctagctagtggc |
24147208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 24152414 - 24152644
Alignment:
| Q |
7 |
gaagcatagggtctaaagcaagctctactgtgttcttatgaatttaggcttctgcaaagtgtttattgaactagattccaaactactcgtggacggcatg |
106 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24152414 |
gaagcatagggtctaaagcaagctct---gtgttcttatgaatttaggcttctgcaaagtgtttattgaactagattccaaactactcgtggacggcatg |
24152510 |
T |
|
| Q |
107 |
gcggggagaccaagtcatacaacagagtgggggagtattttatgtgcttgcaaaacatttttatattctttaccaaactttcagataagttttcttcgga |
206 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24152511 |
gcggg-agaccaagtcatacaacatagtggggtagtattttatgtgcttgcaaaacatttttatattctttaccaaactttcggataagttttcttcgga |
24152609 |
T |
|
| Q |
207 |
gacaaacaaacaatgttgctcaccttctagctagt |
241 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| |
|
|
| T |
24152610 |
gacaaacaaacaatattgttcaccttctagctagt |
24152644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 44006786 - 44006577
Alignment:
| Q |
15 |
gggtctaaagcaagctctactgtgttcttatgaatttaggcttctgcaaagtgtttattgaactagattccaaactactcgtggacggcatggcggggag |
114 |
Q |
| |
|
|||| ||||||||||| || |||| ||||||||| || |||||| ||||| || ||||||||||||||||||||| || | || ||||||||||| || |
|
|
| T |
44006786 |
gggtttaaagcaagctttaatgtgg-cttatgaatataagcttctccaaagcgtcaattgaactagattccaaactagtcatagatggcatggcgggaag |
44006688 |
T |
|
| Q |
115 |
accaagtcatacaacagagtgggggagtattttatgtgcttgcaaaacatttttatattctttaccaaactttcagataagttttcttcggagacaaaca |
214 |
Q |
| |
|
||| ||||||| ||||||| ||| |||| ||||| ||||| | ||| | || |||||||||||||||||| || | ||||| ||||||||||||| |
|
|
| T |
44006687 |
acctagtcatagaacagag-gggatagtactttattggcttgtacgacaatcttgtattctttaccaaacttttggagaggttttattcggagacaaacc |
44006589 |
T |
|
| Q |
215 |
aacaatgttgct |
226 |
Q |
| |
|
|||||||||||| |
|
|
| T |
44006588 |
aacaatgttgct |
44006577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 21330832 - 21330785
Alignment:
| Q |
181 |
aaactttcagataagttttcttcggagacaaacaaacaatgttgctca |
228 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| ||| ||||||||||| |
|
|
| T |
21330832 |
aaactttaagataagttttattcggagacaaataaataatgttgctca |
21330785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University