View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3632_low_20 (Length: 209)
Name: NF3632_low_20
Description: NF3632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3632_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 29880755 - 29880584
Alignment:
| Q |
17 |
atatgtttgttattaaggataatgaataacctctctctagtacatcattttgatgataaacaagagagaaaaatttgagtcgaactgggaaattaactaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
29880755 |
atatgtttgttattaaggataatgaataacctctct--agtacatctttttgatgataaacaagagagaaaaatttgagtcgaattcggaaattaactaa |
29880658 |
T |
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| Q |
117 |
cctctagcacattaccgaaaatattgttcctatatatatagaaactttataaacgaacactattaagcctacgt |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29880657 |
cctctagcacattaccgaaaatattgttcctatatataaagaaactttataaacgaacactattaagcctacgt |
29880584 |
T |
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