View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3632_low_3 (Length: 423)
Name: NF3632_low_3
Description: NF3632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3632_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 406
Target Start/End: Original strand, 1155735 - 1156129
Alignment:
| Q |
11 |
agaatatacagataatgtggagaggaaagaaatgtaactgattttacatatatgtgtttctaaactcaaaattaagatcttaaaacggtagtgccaaaaa |
110 |
Q |
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| T |
1155735 |
agaaaatacagataatgtggagaggaaagaaatgtaactgattttacatatatgtgtttctaaactcaaaattaagatcttaaaacggtagtgccaaaaa |
1155834 |
T |
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| Q |
111 |
tgatataacaataacaaaatagtagtctagaaatgtttttcattacaagcttcctctaaggctattaacatctcttaaacaaacaacataaagttaatgg |
210 |
Q |
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| T |
1155835 |
tgatataacaataacaaaatagtaatctagaaatgtttttcattacaagcttcctctaaggctct-aacatatcttatacaaacaacataaagttaatgg |
1155933 |
T |
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| Q |
211 |
ttcccattcctcatgcctaattacttaggttagcaagtgacggagaccattcgttagagcagatgttgagcttaaagctgccttcaatatgctgtaactc |
310 |
Q |
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| T |
1155934 |
ttcccattcctcatgcttaattacttaggttagcaagtgacggagaccattcgttagagcagatgttgagcttaaagctgccttcaatatgctgtaactc |
1156033 |
T |
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| Q |
311 |
tgcataaacataacagtgtgaaatcagcaactgatgcataatcagtctagtgtgaaaactttaaacagtacataggtaaaacagagaaggtgataa |
406 |
Q |
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| T |
1156034 |
tgcacaaacataacagtgtgaaatcagcaactgatgcataatcagtctagtgtgaaaactttaaacagtacataggtaaaacagtgaaggtgataa |
1156129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 23284254 - 23284329
Alignment:
| Q |
239 |
gttagcaagtgacggagaccattcgttagagcagatgttgagcttaaagctgccttcaatatgctgtaactctgca |
314 |
Q |
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| T |
23284254 |
gttaacaagtgacggagaccattcgttagagcaggcgttgagcttaaagctgccttgaatatgttgtgactctgca |
23284329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 23250084 - 23250179
Alignment:
| Q |
239 |
gttagcaagtgacggagaccattcgttagagcagatgttgagcttaaagctgccttcaatatgctgtaactctgcataaacataacagtgtgaaat |
334 |
Q |
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| T |
23250084 |
gttaacaagtgacggagaccattcgttagagcagacgttgagcataaagcagccttaaatatgttgcgactctgaaccaacacaacaatgtgaaat |
23250179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 23321509 - 23321571
Alignment:
| Q |
238 |
ggttagcaagtgacggagaccattcgttagagcagatgttgagcttaaagctgccttcaatat |
300 |
Q |
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||||| |||||||| ||||||||| |||||||||||||||||| ||||||| || |||||||| |
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| T |
23321509 |
ggttaacaagtgactgagaccatttgttagagcagatgttgaggttaaagcagctttcaatat |
23321571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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