View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3632_low_8 (Length: 292)
Name: NF3632_low_8
Description: NF3632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3632_low_8 |
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| [»] chr3 (5 HSPs) |
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| [»] chr1 (5 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 64 - 292
Target Start/End: Complemental strand, 16860027 - 16859799
Alignment:
| Q |
64 |
cactttctgttattacttgttatgatttaacaaaaatttcacttacattttcttgtaatatgactcaaataatattcatttctttctaaagaattcactt |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16860027 |
cactttctgttattacttgttatgatttaacaaaaatttcacttacattttcttgtaatatgactcaaataatattaatttctttctaaagaattcactt |
16859928 |
T |
|
| Q |
164 |
tatgctattactttacttgttgtggtttaactaaaaacatagttttttatttatttacaaagccgaaatnnnnnnntaaaaccaaactgatactaaacca |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
16859927 |
tatgctattactttacttgttgtggtttaactaaaaacatagttttttatttatttacaaagccgaaataaaaaaataaaaccaaactgatactaaacca |
16859828 |
T |
|
| Q |
264 |
tattctcaattctttcactctgagaatca |
292 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
16859827 |
tattctcaattctttcactctgagaatca |
16859799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 42374555 - 42374681
Alignment:
| Q |
115 |
cttgtaatatgactcaaataatattcatttctttctaaagaa--ttcactttatgctatt--------actttacttgttgtggtttaactaaaaacata |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42374555 |
cttgtaatatgactcaaataatattcatttctttctaaaaaaaattcactttatgctattacagtattactttacttgttgtggtttaactaaaaacata |
42374654 |
T |
|
| Q |
205 |
gttttttatttatttacaaagccgaaat |
232 |
Q |
| |
|
|||||| ||||||||||||||| |||| |
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| T |
42374655 |
atttttt-tttatttacaaagcccaaat |
42374681 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 42374878 - 42374930
Alignment:
| Q |
240 |
taaaaccaaactgatactaaaccatattctcaattctttcactctgagaatca |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
42374878 |
taaaaccaaactgatactaaaccatattctcaattctctcactctcagaatca |
42374930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 42403592 - 42403644
Alignment:
| Q |
240 |
taaaaccaaactgatactaaaccatattctcaattctttcactctgagaatca |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
42403592 |
taaaaccaaactgatactaaaccatattctcaattctctcactctcagaatca |
42403644 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Original strand, 42374515 - 42374545
Alignment:
| Q |
64 |
cactttctgttattacttgttatgatttaac |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
42374515 |
cactttctgttattacttgttatgatttaac |
42374545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 64 - 292
Target Start/End: Complemental strand, 37382469 - 37382229
Alignment:
| Q |
64 |
cactttctgttattacttgttatgatttaacaaaaatttcacttacattttcttgtaatatgactcaaataatattcatttctttct--aaagaattcac |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
37382469 |
cactttctgttattacttgttatgatttaacaaaaatttcacttagattttcatgtaatatgactcaaataatattcatttctttctaaaaaaaattcac |
37382370 |
T |
|
| Q |
162 |
tttatgctattactttacttgttgtggtttaactaaaaacatagttttttatttatttacaaagccgaa----------atnnnnnnntaaaaccaaact |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || |||||||||||| |
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|
| T |
37382369 |
tttatgctattactttacttgttgtggtttaactaaaaacatagttttttttttatttacaaagcccaaattattatgcataaaaaaataaaaccaaact |
37382270 |
T |
|
| Q |
252 |
gatactaaaccatattctcaattctttcactctgagaatca |
292 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
37382269 |
gatactaaaccatattctcaattctctcactctcagaatca |
37382229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 64 - 224
Target Start/End: Original strand, 4296569 - 4296732
Alignment:
| Q |
64 |
cactttctgttattacttgttatgatttaacaaaaatttcacttacattttcttgtaatatgactcaaataatattcatttctttct--aaagaattcac |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
4296569 |
cactttctgttattacttgttatgatttaacaaaaatttcacttagattttcttgtaatatgactcaaataatattcatttctttctaaaaaaaattcac |
4296668 |
T |
|
| Q |
162 |
tttatgctattactttacttgttgtggtttaactaaaaacatag-ttttttatttatttacaaa |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
4296669 |
tttatgctattactttacttgttgtggtttaactaaaaacatagtttttttttttatttacaaa |
4296732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 41768524 - 41768438
Alignment:
| Q |
64 |
cactttctgttattacttgttatgatttaacaaaaatttcacttacattttcttgtaatatgactcaaataatattcatttctttct |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41768524 |
cactttctgttattacttgttatgatttaacaaaaatttcacttagattttcttgtaatatgactcaaataatattcatttctttct |
41768438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 50986284 - 50986198
Alignment:
| Q |
64 |
cactttctgttattacttgttatgatttaacaaaaatttcacttacattttcttgtaatatgactcaaataatattcatttctttct |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
50986284 |
cactttctgttattacttgttatgatttaacaaaaatttcacttagattttcttgtaatatggctcaaataatattcatttctttct |
50986198 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 30217740 - 30217700
Alignment:
| Q |
64 |
cactttctgttattacttgttatgatttaacaaaaatttca |
104 |
Q |
| |
|
||||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
30217740 |
cactttctgttattattttttatgatttaacaacaatttca |
30217700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 64 - 292
Target Start/End: Complemental strand, 37742881 - 37742639
Alignment:
| Q |
64 |
cactttctgttattacttgttatgatttaacaaaaatttcacttacattttcttgtaatatgactcaaataatattcatttctttctaaa---gaattca |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||| |
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|
| T |
37742881 |
cactttctgttattacttgttatgatttaacaaaaatttcacttagattttcttgtaatatgactcaaataatattcatttctttctaaaaataatttca |
37742782 |
T |
|
| Q |
161 |
ctttatgctattactttacttgttgtggtttaactaaaaacatagtttttta--tttatttacaaagccgaaat---------nnnnnnntaaaaccaaa |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |
|
|
| T |
37742781 |
ctttatgctattactttacttgttgtggtttaactaaaaacatagttttttatttttatttacaaagcccaaattgttatgcataaaaaataaaaccaaa |
37742682 |
T |
|
| Q |
250 |
ctgatactaaaccatattctcaattctttcactctgagaatca |
292 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
37742681 |
ctgatactaaaccatattctcaattctctcactctcagaatca |
37742639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 44842728 - 44842808
Alignment:
| Q |
67 |
tttctgttattacttgttatgatttaacaaaaatttcacttacattttcttgtaatatgactcaaataatattcatttctt |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44842728 |
tttctgttattacttgttatgatttaacaaaaatttcacttagattttcttgtaatatgactcaaataatattcatttctt |
44842808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 64 - 232
Target Start/End: Complemental strand, 14199619 - 14199448
Alignment:
| Q |
64 |
cactttctgttattacttgttatgatttaacaaaaatttcacttacattttcttgtaatatgactcaaataatattcatttctttctaaaga-attcact |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
14199619 |
cactttctgttattacttgttatgatttaacaaaaatttcacttacattttcttgtaatgtgactcaaataatattcatttctttctaaaaacattcact |
14199520 |
T |
|
| Q |
163 |
ttatgctattactttacttgttgtggtttaactaaaaacatag--ttttttatttatttacaaagccgaaat |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
14199519 |
ttatgctattactttacttgttgtggtttaactaaaaacatagttttttttttttatttacaaagccgaaat |
14199448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 37080060 - 37080016
Alignment:
| Q |
240 |
taaaaccaaactgatactaaaccatattctcaattctttcactct |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37080060 |
taaaaccaaactgatactaaaccatattctcaattctctcactct |
37080016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 14199430 - 14199396
Alignment:
| Q |
240 |
taaaaccaaactgatactaaaccatattctcaatt |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14199430 |
taaaaccaaactgatactaaaccatattctcaatt |
14199396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 64 - 292
Target Start/End: Complemental strand, 34985801 - 34985561
Alignment:
| Q |
64 |
cactttctgttattacttgttatgatttaacaaaaatttcacttacattttcttgtaatatgactcaaataatattcatttctttct---aaagaattca |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| |||||| |
|
|
| T |
34985801 |
cactttctgttattacttgttatgatttaacaaaaatttcacttagattttcttgtaatatgtctcaaataatattcatttctttctaaaaaaaaattca |
34985702 |
T |
|
| Q |
161 |
ctttatgctattactttacttgttgtggtttaactaaaaacatagttttttatttatttacaaagccgaa----------atnnnnnnntaaaaccaaac |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || |||||| |||| |
|
|
| T |
34985701 |
ctttatgctattactttacttgttgtggtttaactaaaaacatagtttttt-tttatttacaaagcccaaattgttatgcataaaaaaataaaactaaac |
34985603 |
T |
|
| Q |
251 |
tgatactaaaccatattctcaattctttcactctgagaatca |
292 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
34985602 |
tgatactaaaccatattctcaattctctcactctcagaatca |
34985561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 64 - 224
Target Start/End: Original strand, 46372482 - 46372644
Alignment:
| Q |
64 |
cactttctgttattacttgttatgatttaacaaaaatttcacttacattttcttgtaatatgactcaaataatattcatttctttct---aaagaattca |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
46372482 |
cactttctgttattacttgttatgatttaacaaaaatttcacttagattttcttgtaatatgactcaaataatattcatttctttctaaaaaaaaattca |
46372581 |
T |
|
| Q |
161 |
ctttatgctattactttacttgttgtggtttaactaaaaacatagttttttatttatttacaaa |
224 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
46372582 |
ctttatgctattacttcacttgttgtggtttaactaaaaacatagtttttt-tatatttacaaa |
46372644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 13098970 - 13098884
Alignment:
| Q |
64 |
cactttctgttattacttgttatgatttaacaaaaatttcacttacattttcttgtaatatgactcaaataatattcatttctttct |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13098970 |
cactttctgttattacttgttatgatttaacaaaaatttcacttagattttcttgtaatatgactcaaataatattcatttctttct |
13098884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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