View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3633_high_12 (Length: 250)
Name: NF3633_high_12
Description: NF3633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3633_high_12 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 28730882 - 28731119
Alignment:
| Q |
13 |
gagaatatagaaagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaac |
112 |
Q |
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| T |
28730882 |
gagaatatagaaagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctcttcgtattttaccttcattgcaagggagaggatgctgaaac |
28730981 |
T |
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| Q |
113 |
cgttattacggagcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtg |
212 |
Q |
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| T |
28730982 |
cgttattacggagcctgagcgttgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggagtgtgaacatgagcactggaacggtg |
28731081 |
T |
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| Q |
213 |
atcaggatgaaacggaaaggagagtgaagtcattctct |
250 |
Q |
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| T |
28731082 |
atcaggatgaaacggaaaggagagtgaagtcattctct |
28731119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 38608815 - 38608578
Alignment:
| Q |
13 |
gagaatatagaaagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaac |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
38608815 |
gagaatatagaaagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcatcgcaagggagaggatgctgaaac |
38608716 |
T |
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| Q |
113 |
cgttattacggagcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtg |
212 |
Q |
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| T |
38608715 |
cgttattacggagcctgagcattgcatctcgtagcatgaggcgcattatagcagggagcacggtgacgccgtgagtgtgaacgtgagcactggaacggtg |
38608616 |
T |
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| Q |
213 |
atcaggatgaaacggaaaggagagtgaagtcattctct |
250 |
Q |
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| T |
38608615 |
atcaggatgaaacggaaaggagagtgaagtcattctct |
38608578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 38793598 - 38793361
Alignment:
| Q |
13 |
gagaatatagaaagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaac |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
38793598 |
gagaatatagaaagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcatcgcaagggagaggatgctgaaac |
38793499 |
T |
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| Q |
113 |
cgttattacggagcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtg |
212 |
Q |
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| T |
38793498 |
cgttattacggagcctgagcattgcatctcgtagcatgaggcgcattatagcagggagcacggtgacgccgtgagtgtgaacgtgagcactggaacggtg |
38793399 |
T |
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| Q |
213 |
atcaggatgaaacggaaaggagagtgaagtcattctct |
250 |
Q |
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| T |
38793398 |
atcaggatgaaacggaaaggagagtgaagtcattctct |
38793361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 38121308 - 38121545
Alignment:
| Q |
13 |
gagaatatagaaagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaac |
112 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
38121308 |
gagaatatagaaagatcatcaacagcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcatagcaagggagaggatgctgaaac |
38121407 |
T |
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| Q |
113 |
cgttattacggagcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtg |
212 |
Q |
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|||||||||||||||| | | || ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
38121408 |
cgttattacggagccttaccattgcatctcgtagcatgaggcgcataatagcagggagcacggtggcgccgggagtgtgaacatgagcaccggaacggtg |
38121507 |
T |
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| Q |
213 |
atcaggatgaaacggaaaggagagtgaagtcattctct |
250 |
Q |
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| T |
38121508 |
atcaggatgaaacggaaaggagagagaactcattctct |
38121545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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