View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3633_high_15 (Length: 237)

Name: NF3633_high_15
Description: NF3633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3633_high_15
NF3633_high_15
[»] chr7 (4 HSPs)
chr7 (1-221)||(354444-354664)
chr7 (12-221)||(10580826-10581030)
chr7 (115-221)||(10575426-10575532)
chr7 (118-190)||(39954885-39954957)
[»] chr3 (5 HSPs)
chr3 (114-221)||(21584633-21584740)
chr3 (118-215)||(25085083-25085180)
chr3 (118-215)||(24497299-24497396)
chr3 (118-215)||(24923500-24923597)
chr3 (118-215)||(24982091-24982188)
[»] chr8 (1 HSPs)
chr8 (114-209)||(14261068-14261163)
[»] chr2 (1 HSPs)
chr2 (114-209)||(41027623-41027718)
[»] chr4 (2 HSPs)
chr4 (114-209)||(22898604-22898699)
chr4 (114-209)||(22950272-22950367)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 354664 - 354444
Alignment:
Q  1 tagattacaatgataacaattgtacggaacactcacatgctacaaatacaaagaaacaacataacaaatcttcatcttcttcatccaccaaaactgtaga 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354664 tagattacaatgataacaattgtatggaacactcacatgctacaaatacaaagaaacaacataacaaatcttcatcttcttcatccaccaaaactgtaga 354565  T
Q  101 gggttcttccctgataaacaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  354564 gggttcttccctgataaacaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaat 354465  T
Q  201 cttcaacactcctcttatttc 221  Q
    |||||||||||||||||||||    
T  354464 cttcaacactcctcttatttc 354444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 10581030 - 10580826
Alignment:
Q  12 gataacaattgtacggaacactcacatgctacaaatacaaagaaacaacataacaaatcttcatcttcttcatccaccaaaactgtagagggttcttccc 111  Q
    |||||||||| ||||||||||||||||| | |||||||| ||||||| | |||||||||||||||||||||||||||||||||  |||||||||||||||    
T  10581030 gataacaattatacggaacactcacatgtttcaaatacacagaaacagcttaacaaatcttcatcttcttcatccaccaaaaccatagagggttcttccc 10580931  T
Q  112 tgataaacaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactc 211  Q
    |||||||||||||||||||||||||||||||||||     || |||||||||||||||||||||||  ||||| ||||||||||||||||||||||| ||    
T  10580930 tgataaacaacatccatagcagtcagagtcttcct-----catgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtc 10580836  T
Q  212 ctcttatttc 221  Q
    ||||||||||    
T  10580835 ctcttatttc 10580826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 10575532 - 10575426
Alignment:
Q  115 taaacaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctc 214  Q
    |||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||||||||| |  ||  |||||| |||||| ||||||||||| ||||    
T  10575532 taaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaagtaacagcatctcttataacattctccaagaagatcttcaacacacctc 10575433  T
Q  215 ttatttc 221  Q
    || ||||    
T  10575432 ttgtttc 10575426  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 39954885 - 39954957
Alignment:
Q  118 acaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattct 190  Q
    ||||||||||| || || | ||| |||||||| ||| |||||||||||||||||||||||| |||| ||||||    
T  39954885 acaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattct 39954957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 21584633 - 21584740
Alignment:
Q  114 ataaacaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcct 213  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||| ||||||| |||| |||||| |||||||||||| |  ||||||    
T  21584633 ataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcct 21584732  T
Q  214 cttatttc 221  Q
    ||| ||||    
T  21584733 cttgtttc 21584740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 25085180 - 25085083
Alignment:
Q  118 acaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctct 215  Q
    ||||||||||| || |||| |||||||||||||||  |||||||||| ||||| |||||||  ||| |||||| |||||| |||||||| || |||||    
T  25085180 acaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctct 25085083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 24497299 - 24497396
Alignment:
Q  118 acaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctct 215  Q
    ||||||||||| || |||| |||||||||||||||  |||||||||| ||||| |||||||  ||| |||| | |||||| |||||||| || |||||    
T  24497299 acaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacctct 24497396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 24923500 - 24923597
Alignment:
Q  118 acaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctct 215  Q
    ||||||||||| || ||||  ||||||||||||||  |||||||||| || |||||||||| |||  |||||| |||||| |||||||| || |||||    
T  24923500 acaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacctct 24923597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 24982188 - 24982091
Alignment:
Q  118 acaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctct 215  Q
    ||||||||||| || || | |||||||||||| ||  |||||||||| ||||| |||||||  ||  |||||| |||||| |||||||| || |||||    
T  24982188 acaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctct 24982091  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 209
Target Start/End: Original strand, 14261068 - 14261163
Alignment:
Q  114 ataaacaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacac 209  Q
    ||||||||||||||||||||| |  ||||||||||| ||| | ||||| || ||||||||||| |  ||| |||||| ||||||||||||||||||    
T  14261068 ataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaaaatcttcaacac 14261163  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 41027718 - 41027623
Alignment:
Q  114 ataaacaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacac 209  Q
    ||||||||||||||||||||| | |||||| ||||| ||  |||| ||||||||||||||||||| |||  |||||| ||| || |||||||||||    
T  41027718 ataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctccaaaaagatcttcaacac 41027623  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 22898699 - 22898604
Alignment:
Q  114 ataaacaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacac 209  Q
    |||||| |||||||||||||| |  |||||||| || ||  ||||||||||||| |||||||| | |||| |||||| ||| || |||||||||||    
T  22898699 ataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctccaaaaatatcttcaacac 22898604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 22950367 - 22950272
Alignment:
Q  114 ataaacaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacac 209  Q
    |||||| |||||||||||||| |  |||||||| || ||  ||||||||||||| |||||||| | |||| |||||| ||| || |||||||||||    
T  22950367 ataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctccaaaaatatcttcaacac 22950272  T

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