View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3633_high_20 (Length: 211)
Name: NF3633_high_20
Description: NF3633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3633_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 40878440 - 40878264
Alignment:
| Q |
18 |
ggtcagtgcttcgaacaaagtctctaactaaaataagagcctactagatagacaattttggatcttcacatttaactaccaatatcgaagaagcgtcatt |
117 |
Q |
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| T |
40878440 |
ggtcagtgctttgaacaaagtctctaactaaaataagagcctactagatagacaattttggatcttcacatttaactaccaatatcgaagaagcgtcatt |
40878341 |
T |
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| Q |
118 |
aatgagtatataatctaaaaatccattacctgttctggccacctcagctacttcatttaaaaatcttgattccatga |
194 |
Q |
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| T |
40878340 |
aatgagtatataatctaaaaatccattacctgttctggccacctcagctacttcatttataaatcttgattccatga |
40878264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 40922987 - 40923049
Alignment:
| Q |
128 |
taatctaaaaatccattacctgttctggccacctcagctacttcatttaaaaatcttgattcc |
190 |
Q |
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| T |
40922987 |
taatctaaaaattcattacctgttctaaccacctcagctaccgcatttaaaaatcctgattcc |
40923049 |
T |
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