View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3633_high_7 (Length: 309)
Name: NF3633_high_7
Description: NF3633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3633_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 4542862 - 4543137
Alignment:
| Q |
16 |
atcaacatcactaccagaacagaaatcagaaagtaagatacaaccataataaagtggatatcaacctcaatctataacccaaaattagcaccaattaaac |
115 |
Q |
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| T |
4542862 |
atcaacatcactaccagaacagaaatcagaaagtaagatacaaccataataaagtggatatcatcctcaatctataacccaaaattagcaccaattaaac |
4542961 |
T |
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| Q |
116 |
attagtaacttgcgatcaagtttagcatctacaaatgaagtttcataaatatatacataagttcgaaatatacatacctgactagggatttgcctcttat |
215 |
Q |
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| T |
4542962 |
attggtaacttgcgatcaagtttagcatctacaaatgaagtttcataaatatatacataagttcgaaatatacatacctgactagggatttgcctcttat |
4543061 |
T |
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| Q |
216 |
aaaaaacagatgaaggaggaaaatgagcttgatatgaaggagttggatgaacatacacactataacgactctcatg |
291 |
Q |
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| T |
4543062 |
aaaaaacagatgaaggaggaaaatgagcttgatatgaaggagttggatgaacatacacactataacgactctcatg |
4543137 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 25520003 - 25520046
Alignment:
| Q |
16 |
atcaacatcactaccagaacagaaatcagaaagtaagatacaac |
59 |
Q |
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| T |
25520003 |
atcaacatcaccaccagaacggaaatcagaaagtaagatacaac |
25520046 |
T |
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