View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3633_low_1 (Length: 701)
Name: NF3633_low_1
Description: NF3633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3633_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 71 - 437
Target Start/End: Original strand, 26679534 - 26679900
Alignment:
| Q |
71 |
ttttgaagttggcactcggactaaattgacagggttgttgatgcagcagcaaattgagagaaatagacatgcagaaaatcactgccagtctgtatccaat |
170 |
Q |
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| T |
26679534 |
ttttgaagttggcactcggactaaattgacagggttgttgatgcagcagcaaattgagagaaatagacatgcagaaaaccactgccagtctgtatccaat |
26679633 |
T |
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| Q |
171 |
cacagaaactatttgcatcataaatgaacatgaaaaccggaaacattggggattgatgaggaacctggccatgactgagctccattaggcaaccataatt |
270 |
Q |
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| T |
26679634 |
cacagaaactatttgcttcataaatgaacatgaaaaccggaaacattggggatcgatgaggaacctggccatgactgagctccattaggcgaccataatt |
26679733 |
T |
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| Q |
271 |
aggaacccaagaatcctatcagaacttagcaacttctatgtttttgattaccaaagtgatgttgttttaaacgtcttcacaaccatttataatagctctc |
370 |
Q |
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| T |
26679734 |
aggaacccaagaatcctatcagaacttagcaacttctatgtttttgattaccaaagtgatgttgttttaaacgtcttcacaaccatttataatagctctc |
26679833 |
T |
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| Q |
371 |
caaagattagaagagctagatttcatgcttaaaggaagagatgttgagcatactacaaccgttatta |
437 |
Q |
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| T |
26679834 |
caaagattagaagagctagattttatgcttaaaggaagagatgttgagcatactacaaccgttatta |
26679900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 593 - 687
Target Start/End: Original strand, 26680937 - 26681029
Alignment:
| Q |
593 |
caattgagccttttctcatcatctttttcaatcaaattttttaatgaattctcaagagtattcatatgctctcttatctttcggatgtgtatgat |
687 |
Q |
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| T |
26680937 |
caattgagccctctctcatcatctttttcaatcaaatttt-taatgaattctcaagagtattcatatgctctc-tatctttcggatgtgtatgat |
26681029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 26679499 - 26679534
Alignment:
| Q |
18 |
tttgattccaaagaaaagctctaattctgtgaggat |
53 |
Q |
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| T |
26679499 |
tttgattccaaagaaaagctctaattctgtgaggat |
26679534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 494
Target Start/End: Original strand, 26680768 - 26680829
Alignment:
| Q |
433 |
tattatatcaacattattgtggcattagagtttacaaaacnnnnnnntgttaccaatcatgg |
494 |
Q |
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| T |
26680768 |
tattaaatcaacattactgtggcattagagtttacagaacaaaaaaatgttaccaatcatgg |
26680829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 608 - 687
Target Start/End: Complemental strand, 50191652 - 50191576
Alignment:
| Q |
608 |
tcatcatctttttcaatcaaattttttaatgaattctcaagagtattcatatgctctcttatctttcggatgtgtatgat |
687 |
Q |
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| T |
50191652 |
tcatcatttttttcgatcaaatttt--aatggattctcgagagtattaatatgctctc-tatctttccaatttgtatgat |
50191576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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