View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3633_low_10 (Length: 270)
Name: NF3633_low_10
Description: NF3633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3633_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 54962786 - 54962546
Alignment:
| Q |
15 |
gataattggaactttaaaccactggttatcttttaggacttgaaggccttctacctctttatcttgcagcaaaaaagttatagatgatccatcagcatgt |
114 |
Q |
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| T |
54962786 |
gataattggaactttaaaccactggttatcttttaggacttgaaggccttctacctctttatcttgcagcaaaaaagttatagatgatccatcagcatgt |
54962687 |
T |
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| Q |
115 |
ggctttacgcctagaacatgatcaggcataggacatggagggtagtaattgattctcataaacattgtatctctctctccacattcctttaggaagcaat |
214 |
Q |
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| T |
54962686 |
ggctttacgcctagaacatgatcaggcataggacatggagggtagtaattgattctcataaacattgtatctctctctccacattcctttaggaagcaat |
54962587 |
T |
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| Q |
215 |
cctcttccaagttcagtgattttgctatggctcttaaaatt |
255 |
Q |
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| T |
54962586 |
cctcttccaagttcagtgattttgctacggctcttaaaatt |
54962546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 54983599 - 54983389
Alignment:
| Q |
19 |
attggaactttaaaccactggttatcttttaggacttgaaggccttctacctctttatcttgcagcaaaaaagttatagatgatccatcagcatgtggct |
118 |
Q |
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| T |
54983599 |
attggaactttaaaccatttgttatctttgaggacttggaggccttcaacctctttatcttgcagcagaatagttatagttgatggatcagaatgtacct |
54983500 |
T |
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| Q |
119 |
ttacgcctagaacatgatcaggcataggacatggagggtagtaattgattctcataaacattgtatctctctctccacattcctttaggaagcaatcctc |
218 |
Q |
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| T |
54983499 |
tcaggcctagaacatgatcagccttaggacatggagggtagtaattgattctcatatacgttgcagctctctctccacattccttttggaaacagtcctc |
54983400 |
T |
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| Q |
219 |
ttccaagttca |
229 |
Q |
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|||||| |||| |
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| T |
54983399 |
ttccaaattca |
54983389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 31321784 - 31321997
Alignment:
| Q |
19 |
attggaactttaaaccactggttatcttttaggacttgaaggccttctacctctttatcttgcagcaaaaaagttatagatgatccatcagcatgtggct |
118 |
Q |
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|||||||| ||||||||| |||||||||| || ||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
31321784 |
attggaaccttaaaccaccggttatctttgagaacttggaggccttctacctttttatcttgcagcaaaaaagttatagatgatgaatcagaatgtggct |
31321883 |
T |
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| Q |
119 |
ttacgcctagaacatgatcaggcataggacatggagggtagtaattgattctcataaacattgtatctctctctccacattcctttaggaagcaatcctc |
218 |
Q |
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| T |
31321884 |
tcagccccagagcatgatcagccataggacatggagggtagtaattggttctcatagacattgtacctctctctccacattcctttaggaaacaatcctc |
31321983 |
T |
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| Q |
219 |
ttccaagttcagtg |
232 |
Q |
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| T |
31321984 |
ttccaagttcagtg |
31321997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 31329590 - 31329802
Alignment:
| Q |
19 |
attggaactttaaaccactggttatcttttaggacttgaaggccttctacctctttatcttgcagcaaaaaagttatagatgatccatcagcatgtggct |
118 |
Q |
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||||||||||||||||||||||| ||||| || ||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
31329590 |
attggaactttaaaccactggttgtctttgagaacttggaggccttctaccttattatcttgcagcaaaaaagttatagatgatgaatcagaatgtggct |
31329689 |
T |
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| Q |
119 |
ttacgcctagaacatgatcaggcataggacatggagggtagtaattgattctcataaacattgtatctctctctccacattcctttaggaagcaatcctc |
218 |
Q |
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| T |
31329690 |
tcagccccagagcatgatcagccataggacatggagggtagtaattggttctcatagacattgtacccctctctccacattcctttaggaaacaatcctc |
31329789 |
T |
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| Q |
219 |
ttccaagttcagt |
231 |
Q |
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||||||||||||| |
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| T |
31329790 |
ttccaagttcagt |
31329802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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