View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3633_low_2 (Length: 538)

Name: NF3633_low_2
Description: NF3633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3633_low_2
NF3633_low_2
[»] chr8 (3 HSPs)
chr8 (37-360)||(35551146-35551469)
chr8 (424-519)||(18022053-18022148)
chr8 (353-423)||(35551495-35551565)
[»] chr3 (1 HSPs)
chr3 (424-519)||(9180062-9180157)
[»] chr2 (2 HSPs)
chr2 (424-519)||(3925578-3925673)
chr2 (424-512)||(36636915-36637003)
[»] chr4 (2 HSPs)
chr4 (429-519)||(54751602-54751692)
chr4 (423-491)||(55765480-55765548)
[»] chr5 (2 HSPs)
chr5 (429-519)||(30411051-30411141)
chr5 (424-512)||(33868155-33868243)


Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 37 - 360
Target Start/End: Original strand, 35551146 - 35551469
Alignment:
Q  37 gttatgagataaaaaatgaatcaaacgtgtacctcaataaaagagatgaagaaggaacgtcgttcaccgccgttgattttgggtttgagcgatgaagaag 136  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  35551146 gttatgggataaaaaatgaatcaaacgtgtacctcaaaaaaagagatgaagaaggaacgtcgttcaccgccgttgattttggctttgagctatgaagaag 35551245  T
Q  137 gagcgttggtcttgattgcactgtgatatcagggaagggaatggggagaaggcgtagaagaaagtcgtttccgtgcttgggtttataaagttgttttctt 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35551246 gagcgttggtcttgattgcactgtgatatcagggaagggaatggggagaaggcgtagaagaaagtcgtttccgtgcttgggtttataaagttgtttactt 35551345  T
Q  237 agcgattaataatcctacactagtggagggtgacacaacacaactaaagagaatcaatcgcaacaactttatgaatttacacttgtcaagaggattccaa 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35551346 agcgattaataatcctacactagtggagggtgacacaacacaactaaagagaatcaatcgcaacaactttatgaatttacacttgtcaagaggattccaa 35551445  T
Q  337 cctcggagctaaagacaatttgtc 360  Q
    ||||||||||||||||||||||||    
T  35551446 cctcggagctaaagacaatttgtc 35551469  T

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Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 424 - 519
Target Start/End: Original strand, 18022053 - 18022148
Alignment:
Q  424 ggcaaaagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctc 519  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18022053 ggcaaaagttatggtgcataagtccttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctc 18022148  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 353 - 423
Target Start/End: Original strand, 35551495 - 35551565
Alignment:
Q  353 aatttgtcgttttaaaatcctacaccgttaaactaaagttatttatatgaggtgtccgagaacttacaaga 423  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35551495 aatttgtcgttttaaaatcctacacggttaaactaaagttatttatatgaggtgtccgagaacttacaaga 35551565  T

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Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 424 - 519
Target Start/End: Complemental strand, 9180157 - 9180062
Alignment:
Q  424 ggcaaaagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctc 519  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9180157 ggcaaaagttatggtgcataagtccttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctc 9180062  T

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Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 424 - 519
Target Start/End: Original strand, 3925578 - 3925673
Alignment:
Q  424 ggcaaaagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctc 519  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3925578 ggcaaaagttatggtgcataagtccttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcggctc 3925673  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 512
Target Start/End: Complemental strand, 36637003 - 36636915
Alignment:
Q  424 ggcaaaagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatc 512  Q
    |||||||||| |  |||||||||| ||  |||||| ||||||||||| | |||  ||||| ||||||| ||||||||||||||||||||    
T  36637003 ggcaaaagttattatgcataagtcattttcttatgtaccctacataaacacttcacaaccatcagatttgttttacacgtgtaataatc 36636915  T

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Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 429 - 519
Target Start/End: Original strand, 54751602 - 54751692
Alignment:
Q  429 aagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctc 519  Q
    ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54751602 aagttatggtgcataagtgcttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctc 54751692  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 491
Target Start/End: Original strand, 55765480 - 55765548
Alignment:
Q  423 aggcaaaagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagatt 491  Q
    ||||||||||| ||||||||||||| || ||||||||||| | ||||| | | || ||||| |||||||    
T  55765480 aggcaaaagttatggtgcataagtcatttccttatgcaccgtgcataaacacattacaaccatcagatt 55765548  T

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Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 429 - 519
Target Start/End: Complemental strand, 30411141 - 30411051
Alignment:
Q  429 aagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctc 519  Q
    ||||| |||||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30411141 aagttatggtgcataagggtttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctc 30411051  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 512
Target Start/End: Original strand, 33868155 - 33868243
Alignment:
Q  424 ggcaaaagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatc 512  Q
    |||||||||| |  |||||||||| || ||||||||||||| ||||| | |||  ||||| || ||||  ||||||| |||||||||||    
T  33868155 ggcaaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatctgatttattttacatgtgtaataatc 33868243  T

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