View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3633_low_3 (Length: 466)
Name: NF3633_low_3
Description: NF3633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3633_low_3 |
 | |
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| [»] chr4 (2 HSPs) |
| |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 170 - 466
Target Start/End: Complemental strand, 28731477 - 28731181
Alignment:
| Q |
170 |
acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
28731477 |
acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgttccgaatctcctccgtgaac |
28731378 |
T |
|
| Q |
270 |
acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||| |||||||| |
|
|
| T |
28731377 |
acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaactgtcacttc |
28731278 |
T |
|
| Q |
370 |
cgagtcgattcatccgaacagcacttccagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatg |
466 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28731277 |
cgagtcgattcatccgaacagcacttccggcggtgctccaaaagtattcatcggaggcgttgagattactcaaccagatctattcaacaacggaatg |
28731181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 28731717 - 28731551
Alignment:
| Q |
9 |
accttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccactgaaggaatcgaagctt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
28731717 |
accttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttccggtgacgttgtcaccgccactgaaggaatcgaagctt |
28731618 |
T |
|
| Q |
109 |
cattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28731617 |
cattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
28731551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 170 - 466
Target Start/End: Complemental strand, 38121903 - 38121607
Alignment:
| Q |
170 |
acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac |
269 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||| ||||||| |
|
|
| T |
38121903 |
acttcccctgcttggaccggtcctttcaccattttcgctccctctgatgcatcgcttcgcacttgcttttcttgctctgttccgaatctccttcgtgaac |
38121804 |
T |
|
| Q |
270 |
acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc |
369 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
38121803 |
acatagttccaggtatattcaccatcgaatatcttcggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttc |
38121704 |
T |
|
| Q |
370 |
cgagtcgattcatccgaacagcacttccagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatg |
466 |
Q |
| |
|
|||||||||||||| ||||| ||||||| || ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38121703 |
cgagtcgattcatcagaacaacacttccggcagtgctccaaaagtcttcatcggaggcgttgagattactcaaccggatctattcaacaacggaatg |
38121607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 178 - 466
Target Start/End: Original strand, 38608228 - 38608516
Alignment:
| Q |
178 |
tgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgtt |
277 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38608228 |
tgcttggaccggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgtt |
38608327 |
T |
|
| Q |
278 |
ccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcga |
377 |
Q |
| |
|
|||||| ||||||| ||||| ||| | || ||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
38608328 |
ccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcga |
38608427 |
T |
|
| Q |
378 |
ttcatccgaacagcacttccagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatg |
466 |
Q |
| |
|
||||| |||||| ||| || |||||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
38608428 |
ttcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatg |
38608516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 178 - 466
Target Start/End: Original strand, 38793011 - 38793299
Alignment:
| Q |
178 |
tgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgtt |
277 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38793011 |
tgcttggaccggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgtt |
38793110 |
T |
|
| Q |
278 |
ccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcga |
377 |
Q |
| |
|
|||||| ||||||| ||||| ||| | || ||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
38793111 |
ccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcga |
38793210 |
T |
|
| Q |
378 |
ttcatccgaacagcacttccagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatg |
466 |
Q |
| |
|
||||| |||||| ||| || |||||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
38793211 |
ttcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatg |
38793299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 38122143 - 38121977
Alignment:
| Q |
9 |
accttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccactgaaggaatcgaagctt |
108 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38122143 |
accttttcctctatgcgattctctatgctcttcttcgcaatcttcttcaccgccatgctttccggtgacgaggtcaccgccactgaaggaatcgaagctt |
38122044 |
T |
|
| Q |
109 |
cattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
175 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38122043 |
cattcccaccgccacctccgcacgatcttcaagaacattcgttcttctctcaaactgcattacttcc |
38121977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 38607983 - 38608146
Alignment:
| Q |
9 |
accttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccactgaaggaatcgaagctt |
108 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||||||||||||||| ||||| ||| |
|
|
| T |
38607983 |
accttttcttctcttcgattctcgatgctctt---cgcaatcttcttcaccgtcatgctttccggtgacaaggtcaccgccactgaaggtttcgaacctt |
38608079 |
T |
|
| Q |
109 |
cattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
175 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38608080 |
caatcccaccgctacctccacatgatcttcaagaacattcgttcttctctcacaccacattacttcc |
38608146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 38792766 - 38792929
Alignment:
| Q |
9 |
accttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccactgaaggaatcgaagctt |
108 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||||||||||||||| ||||| ||| |
|
|
| T |
38792766 |
accttttcttctcttcgattctcgatgctctt---cgcaatcttcttcaccgtcatgctttccggtgacaaggtcaccgccactgaaggtttcgaacctt |
38792862 |
T |
|
| Q |
109 |
cattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
175 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38792863 |
caatcccaccgctacctccacatgatcttcaagaacattcgttcttctctcacaccacattacttcc |
38792929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 170 - 397
Target Start/End: Complemental strand, 31529431 - 31529204
Alignment:
| Q |
170 |
acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac |
269 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
31529431 |
acttcccctgcttggaccggtcctttcactattttcgctccctctgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaac |
31529332 |
T |
|
| Q |
270 |
acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
31529331 |
acatcgttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttc |
31529232 |
T |
|
| Q |
370 |
cgagtcgattcatccgaacagcacttcc |
397 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
31529231 |
cgagtcgattcatccgaacaacacttcc |
31529204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 170 - 397
Target Start/End: Complemental strand, 51801499 - 51801272
Alignment:
| Q |
170 |
acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac |
269 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||| | ||| | | |||||| |||||||||| |||| |||||||||||||||||| |
|
|
| T |
51801499 |
acttcccctgcttggaccggtcctttcactattttcgctccctctgatacttcgcttcacacttgcttttcttgctgtgttccgaatctcctccgtgaac |
51801400 |
T |
|
| Q |
270 |
acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc |
369 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||| ||||||||| |
|
|
| T |
51801399 |
acatcgttccagatatattcaccatcaaatacctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaatcgtcacttc |
51801300 |
T |
|
| Q |
370 |
cgagtcgattcatccgaacagcacttcc |
397 |
Q |
| |
|
||| |||||||||||||||| ||||||| |
|
|
| T |
51801299 |
cgattcgattcatccgaacaacacttcc |
51801272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 31529533 - 31529505
Alignment:
| Q |
147 |
tcgttcttctctcacactgcattacttcc |
175 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31529533 |
tcgttcttctctcacactgcattacttcc |
31529505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 51801601 - 51801573
Alignment:
| Q |
147 |
tcgttcttctctcacactgcattacttcc |
175 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
51801601 |
tcgttcttctctcacactgcattacttcc |
51801573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 7e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 170 - 396
Target Start/End: Original strand, 34875789 - 34876015
Alignment:
| Q |
170 |
acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac |
269 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||| ||||||| |||||| ||| | | |||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
34875789 |
acttcccctgcttggaccggtcctttcactatttttgctccctttgatgcttcgcttcacacttgcttttcttgctctgttccgaatctcctccgtgaac |
34875888 |
T |
|
| Q |
270 |
acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||||| ||||||| |
|
|
| T |
34875889 |
acatcgttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaaccatcacttc |
34875988 |
T |
|
| Q |
370 |
cgagtcgattcatccgaacagcacttc |
396 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
34875989 |
cgagtcgattcatccgaacaacacttc |
34876015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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