View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3633_low_5 (Length: 435)
Name: NF3633_low_5
Description: NF3633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3633_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 4 - 282
Target Start/End: Complemental strand, 37914729 - 37914451
Alignment:
| Q |
4 |
atgtcgaagaaaatgagagggattctcgttggtgatggaagtgaacttggtggtggtgaaatttgagtctgctctatcaccttcataattactgtttcgt |
103 |
Q |
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| T |
37914729 |
atgtcaaagaaagtgagagggattctcgttggtgatggaagtgaacttggtggtggtgaaatttgagtctgctctatcaccttcataattactgtttcgt |
37914630 |
T |
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| Q |
104 |
tatgatagaatttgatctcgtgatgatgaagcatgtttgtgttgctcatgttgttgtattgttttgaaatgagatgagaaaagagtaagttgaacttgaa |
203 |
Q |
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| T |
37914629 |
tatgatagaatttgatctcgtgatgatgaagcatgtttgtgttgctcatgttgttgtattgttttgaaatgagatgagaaaagagtaagttgaacttgaa |
37914530 |
T |
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| Q |
204 |
aatatgtctcatcatttcccgatatttaatcaccttcatctggcaccactcattttacacatggcatattttgacttat |
282 |
Q |
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| T |
37914529 |
aatatgtctcatcatttcccgatatttaatcaccttcatctggcaccactcattttacacatggcatattttaacttat |
37914451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 37914186 - 37914134
Alignment:
| Q |
366 |
ctcactgctcatcggtcaccacccatcttcactctcactcgttagcctcacat |
418 |
Q |
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| T |
37914186 |
ctcactgctcatcggtcaccacccatcttcactctcactcgttagcctcacat |
37914134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 37906566 - 37906446
Alignment:
| Q |
4 |
atgtcgaagaaaatgagagggattctcgttggtgatggaagtgaacttggtggtggtgaaatttgagtctgctctatcaccttcataattactgtttcgt |
103 |
Q |
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| T |
37906566 |
atgtcgaagaaggtgagagggagtgttgttggtgatggaagtgaatttggtggtggtgcaacttggctatgttctattaccttcatcataactgtgttgt |
37906467 |
T |
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| Q |
104 |
tatgatagaatttgatctcgt |
124 |
Q |
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| T |
37906466 |
tgtgattgaatttggtctcgt |
37906446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 37961526 - 37961584
Alignment:
| Q |
31 |
gttggtgatggaagtgaacttggtggtggtgaaatttgagtctgctctatcaccttcat |
89 |
Q |
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| T |
37961526 |
gttggtgatgtaagtgaatttggtggtggtgcaacttgactatgttctatcaccttcat |
37961584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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