View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3633_low_6 (Length: 341)
Name: NF3633_low_6
Description: NF3633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3633_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 40724183 - 40723863
Alignment:
| Q |
1 |
caaaatggctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaattgattctatt |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40724183 |
caaactggctggagagagtgaaagcaatcttaggaaagcgtttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaattgattctatt |
40724084 |
T |
|
| Q |
101 |
gcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgtgctcatgttattg |
200 |
Q |
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| T |
40724083 |
gcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgtgctcatgttattg |
40723984 |
T |
|
| Q |
201 |
tcatgggggccactaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723983 |
tcatgggggccactaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgg |
40723884 |
T |
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| Q |
301 |
gcgacttgaagtccttcgcat |
321 |
Q |
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||||||||||||||||||||| |
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| T |
40723883 |
gcgacttgaagtccttcgcat |
40723863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 40665883 - 40666066
Alignment:
| Q |
1 |
caaaatggctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttatt-gatgaaattgattctat |
99 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40665883 |
caaactggctggagagagtgaaagcaatcttaggaaagcgtttgaagaagcagaaaagaatgcaccatccatcatctttatttgatgaaattgattctat |
40665982 |
T |
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| Q |
100 |
tgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatc |
183 |
Q |
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| T |
40665983 |
tgcacccaagcgggagaagacaaacggtgaagttgaaagaaggattgtctcacaacttctgactcttatggatgggctagaatc |
40666066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 239 - 321
Target Start/End: Original strand, 40666102 - 40666184
Alignment:
| Q |
239 |
gcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaagtccttcgcat |
321 |
Q |
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| T |
40666102 |
gcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaagtccttcgcat |
40666184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 8 - 318
Target Start/End: Complemental strand, 41093003 - 41092693
Alignment:
| Q |
8 |
gctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaattgattctattgcaccca |
107 |
Q |
| |
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||||| ||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| |||||||||||||||||||| || ||||| || || || | |
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| T |
41093003 |
gctggtgagagtgaaagcaatctaaggaaggcatttgaggaagctgagaagaatgcaccttccatcatctttattgatgagatagattccatagctccta |
41092904 |
T |
|
| Q |
108 |
agcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgtgctcatgttattgtcatggg |
207 |
Q |
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|||| || || || | ||||||||||| || |||||||| || ||||| |||| ||||||||||| || ||||| ||||| ||||| ||||| ||||| |
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| T |
41092903 |
agcgagagaaaactcacggtgaagtagagaggaggattgtctcccaactcttgacccttatggatggtcttaaatcacgtgcacatgtaattgttatggg |
41092804 |
T |
|
| Q |
208 |
ggccactaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgactt |
307 |
Q |
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||||| ||| | ||||||||||||||||| ||| | || |||||||| || ||||||||||| || ||||||||||||||||| || ||||||| ||| |
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| T |
41092803 |
agccacaaataggcccaatagcattgaccctgcacttaggaggtttggaaggtttgatagggagattgatattggtgttccagacgaggttgggcgtctt |
41092704 |
T |
|
| Q |
308 |
gaagtccttcg |
318 |
Q |
| |
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|| || ||||| |
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| T |
41092703 |
gaggttcttcg |
41092693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 309
Target Start/End: Original strand, 27977299 - 27977602
Alignment:
| Q |
6 |
tggctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaattgattctattgcacc |
105 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| ||||| |||||||| || ||||||||||| || |||||||| |||||||| || || || ||||| || |
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| T |
27977299 |
tggctggtgagagtgaaagtaatctgaggaaggcattcgaagaagctgagaagaatgcaccctcaatcatcttcattgatgagatagactccattgctcc |
27977398 |
T |
|
| Q |
106 |
caagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgtgctcatgttattgtcatg |
205 |
Q |
| |
|
||| |||| ||||| ||||||||||| || |||| |||||||| || || |||| || ||||||||||| ||||||||||| ||||| ||||| ||| |
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| T |
27977399 |
aaagagggagaagactaatggtgaagttgagcgaagaattgtttcccagctcttgaccctcatggatgggcttaaatcccgtgcacatgtaattgttatg |
27977498 |
T |
|
| Q |
206 |
ggggccactaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgac |
305 |
Q |
| |
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|| || || ||||| ||||||||||| ||||| || | | |||||||| || |||||| |||| || ||||||||||| ||||||||| |||| || | |
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| T |
27977499 |
ggagcaacaaatcgtcccaatagcatcgaccctgctcttcggaggtttggaaggtttgatcgggagattgatattggtgtaccagatgaagttggacgtc |
27977598 |
T |
|
| Q |
306 |
ttga |
309 |
Q |
| |
|
|||| |
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|
| T |
27977599 |
ttga |
27977602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 15690253 - 15690360
Alignment:
| Q |
63 |
caccatccatcatctttattgatgaaattgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgac |
162 |
Q |
| |
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|||||| |||| |||||||||||||| ||||||||| || |||||| | || |||||| || |||||| || |||||||||||||||||| | ||| |
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| T |
15690253 |
caccattcatcttctttattgatgaatttgattctactgtacccaa--gagagaagacacgtgatgaagttgatagaaggattgtttcacaagtcttgaa |
15690350 |
T |
|
| Q |
163 |
tcttatggat |
172 |
Q |
| |
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|||||||||| |
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|
| T |
15690351 |
tcttatggat |
15690360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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