View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3634_high_12 (Length: 441)

Name: NF3634_high_12
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3634_high_12
NF3634_high_12
[»] scaffold0088 (1 HSPs)
scaffold0088 (106-433)||(40096-40424)
[»] chr1 (10 HSPs)
chr1 (143-386)||(21290768-21291010)
chr1 (143-386)||(33128729-33128973)
chr1 (243-386)||(10158683-10158826)
chr1 (267-386)||(4601013-4601133)
chr1 (267-386)||(18780673-18780791)
chr1 (258-386)||(18522843-18522972)
chr1 (382-414)||(4600822-4600854)
chr1 (75-109)||(45047097-45047131)
chr1 (385-413)||(18780483-18780511)
chr1 (385-413)||(33129136-33129164)
[»] chr3 (6 HSPs)
chr3 (106-384)||(8875552-8875831)
chr3 (178-386)||(16925567-16925775)
chr3 (267-386)||(13409932-13410052)
chr3 (76-109)||(42710569-42710602)
chr3 (73-109)||(46623053-46623089)
chr3 (77-109)||(51540889-51540921)
[»] chr6 (10 HSPs)
chr6 (106-386)||(12418396-12418677)
chr6 (106-386)||(12420969-12421250)
chr6 (143-386)||(23590537-23590775)
chr6 (143-386)||(11306521-11306766)
chr6 (257-386)||(23010356-23010487)
chr6 (259-386)||(20229027-20229154)
chr6 (259-386)||(22123011-22123138)
chr6 (256-386)||(11988536-11988666)
chr6 (385-426)||(34501127-34501169)
chr6 (76-109)||(7412678-7412711)
[»] scaffold0501 (1 HSPs)
scaffold0501 (143-386)||(8694-8936)
[»] chr7 (12 HSPs)
chr7 (176-386)||(17132643-17132854)
chr7 (243-386)||(15125238-15125381)
chr7 (267-386)||(17140251-17140370)
chr7 (178-386)||(7404300-7404509)
chr7 (256-325)||(14961329-14961398)
chr7 (256-325)||(15390801-15390870)
chr7 (381-426)||(15125043-15125088)
chr7 (385-418)||(14961080-14961113)
chr7 (385-418)||(15390552-15390585)
chr7 (385-413)||(7404669-7404697)
chr7 (385-413)||(17140059-17140087)
chr7 (385-413)||(17881258-17881286)
[»] chr8 (9 HSPs)
chr8 (144-386)||(24477567-24477810)
chr8 (197-357)||(22738262-22738423)
chr8 (197-386)||(920979-921166)
chr8 (176-386)||(22264095-22264306)
chr8 (257-386)||(9007028-9007158)
chr8 (349-385)||(22739056-22739092)
chr8 (389-418)||(15927646-15927675)
chr8 (381-422)||(22815045-22815086)
chr8 (385-413)||(23818075-23818103)
[»] chr2 (9 HSPs)
chr2 (176-386)||(11323816-11324027)
chr2 (165-386)||(20478078-20478299)
chr2 (243-386)||(22803003-22803147)
chr2 (197-325)||(25568365-25568493)
chr2 (273-386)||(13822043-13822156)
chr2 (385-416)||(25568658-25568689)
chr2 (75-109)||(36874920-36874954)
chr2 (72-109)||(30216088-30216125)
chr2 (385-413)||(11323632-11323660)
[»] scaffold0054 (1 HSPs)
scaffold0054 (200-325)||(76864-76988)
[»] scaffold0502 (1 HSPs)
scaffold0502 (246-386)||(12132-12272)
[»] scaffold0009 (1 HSPs)
scaffold0009 (173-386)||(269668-269883)
[»] chr5 (5 HSPs)
chr5 (235-386)||(17987580-17987731)
chr5 (257-382)||(16075669-16075795)
chr5 (283-386)||(23779018-23779121)
chr5 (283-386)||(23865971-23866074)
chr5 (235-288)||(22969307-22969360)
[»] scaffold0338 (1 HSPs)
scaffold0338 (235-386)||(17334-17485)
[»] scaffold0004 (1 HSPs)
scaffold0004 (176-304)||(357648-357777)
[»] scaffold0056 (1 HSPs)
scaffold0056 (267-386)||(54371-54490)
[»] scaffold0065 (1 HSPs)
scaffold0065 (197-325)||(14542-14669)
[»] scaffold0170 (1 HSPs)
scaffold0170 (257-304)||(1454-1501)
[»] chr4 (3 HSPs)
chr4 (257-386)||(12809861-12809992)
chr4 (385-413)||(11889647-11889675)
chr4 (77-109)||(35420715-35420747)
[»] scaffold0031 (1 HSPs)
scaffold0031 (385-413)||(38258-38286)


Alignment Details
Target: scaffold0088 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 106 - 433
Target Start/End: Original strand, 40096 - 40424
Alignment:
Q  106 ctcgacggaatatcaagcctagagcgaaaaactagattttcgacaaagtaaggctcaaaaagaaaactcacgtcgaagtcaagcaaaa-gcggggaaagc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||| | |||||||||    
T  40096 ctcgacggaatatcaagcctagagcgaaaaactagattttcgacaaagtaaagctcaaaaagaaaattcacgttgaagtcaagcaaaaaggggggaaagc 40195  T
Q  205 acgatttcaagcattgaaacagtttccaggtagtggagacgtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtggttcgcca 304  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  40196 acgatttcaagcattgaaacggtttccaggtagtggagacgtgggacaggaagttgtccaagatggaggaagtgatgatcatggagttagtggttcgtca 40295  T
Q  305 tctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatatacaaaattcttcaacactcaaactcaaacctgtcgagagaca 404  Q
    |||||||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40296 tctagatttttagtataaatagtattttccaagccagaaagtgggtcacaaatcatatacaaaattcttcaacactcaaactcaaacctgtcgagagaca 40395  T
Q  405 gtgccttttacttcaaactcgttcatctc 433  Q
    |||||||||||||||||| ||||| ||||    
T  40396 gtgccttttacttcaaacccgttcttctc 40424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 7e-59; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 143 - 386
Target Start/End: Original strand, 21290768 - 21291010
Alignment:
Q  143 tttcgacaaagtaaggctcaaaaagaaaactcacgtcgaagtcaagcaaaagcggggaaagcacgatttcaagcattgaaacagtttccaggtagtggag 242  Q
    ||||||| ||| |||||| ||| || || ||  |||| ||||||||||||||  |||||||||||||||||||||||||||| ||||||| ||||||||     
T  21290768 tttcgacgaagcaaggctgaaagagtaatcttgcgtcaaagtcaagcaaaaggcgggaaagcacgatttcaagcattgaaacggtttccatgtagtggaa 21290867  T
Q  243 acgtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaa 342  Q
    |||||| ||||| |||||||||  |||||||||||| ||||||||||||||||||||| ||||||||  ||||||||||||||  | |||| ||| | ||    
T  21290868 acgtggcacaggcagttgtccatgatggaggaagtgttgatcatggagttagtggttcaccatctag-gttttagtataaataagagtttccaagccgaa 21290966  T
Q  343 aagtgggtcacaaatcatatacaaaattcttcaacactcaaact 386  Q
    ||||||||||||||||||||| | |||||| |||||||||||||    
T  21290967 aagtgggtcacaaatcatatatagaattctacaacactcaaact 21291010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 143 - 386
Target Start/End: Original strand, 33128729 - 33128973
Alignment:
Q  143 tttcgacaaagtaaggctcaaaaagaaaactcacgtcgaagtcaagcaaaagcggggaaagcacgatttcaagcattgaaacagtttccaggtagtggag 242  Q
    |||||||||||||||| | ||  || ||  || |||||||| |||||||||| | || |||||||||||||||||  ||||| |||||    ||||| |     
T  33128729 tttcgacaaagtaaggttgaacgagcaatttcgcgtcgaagacaagcaaaagggcgggaagcacgatttcaagcaaagaaacggtttcattttagtgtaa 33128828  T
Q  243 a-cgtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaa 341  Q
    | ||||||||| |   | |||||| |||||||||||| ||||||||   |||||||||| |||||||| |||||||||||||||||| |||| ||| |      
T  33128829 aacgtgggacaagtgatagtccaagatggaggaagtgctgatcatgtgcttagtggttcaccatctaggtttttagtataaatagtagtttccaagccgg 33128928  T
Q  342 aaagtgggtcacaaatcatatacaaaattcttcaacactcaaact 386  Q
    |||||| ||| ||||||||||||| |||||| |||||||||||||    
T  33128929 aaagtgagtcgcaaatcatatacataattctacaacactcaaact 33128973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 243 - 386
Target Start/End: Original strand, 10158683 - 10158826
Alignment:
Q  243 acgtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaa 342  Q
    ||||||| || | |||||||||| |||||||||||| |||||||||||||||||||||||||  ||| |||||||||||||||    |||| ||| |  |    
T  10158683 acgtggggcaagcagttgtccaagatggaggaagtgctgatcatggagttagtggttcgccagttaggtttttagtataaataagtgtttccaagccgga 10158782  T
Q  343 aagtgggtcacaaatcatatacaaaattcttcaacactcaaact 386  Q
    || |||||| |||||||||||||||||||| |||||||||||||    
T  10158783 aaatgggtcgcaaatcatatacaaaattctacaacactcaaact 10158826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 386
Target Start/End: Complemental strand, 4601133 - 4601013
Alignment:
Q  267 atggaggaagtgatgatcatggagttagtggttcgccatctagattttt-agtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatataca 365  Q
    |||||||||||| |||||||||  ||||||||||||||||||| ||||| ||||||| ||||| |||| ||||| ||||| ||||| ||||| |||||||    
T  4601133 atggaggaagtgctgatcatgggcttagtggttcgccatctaggttttttagtataagtagtagtttccaagtcgaaaagagggtcgcaaattatataca 4601034  T
Q  366 aaattcttcaacactcaaact 386  Q
     |||| | |||||||||||||    
T  4601033 gaattttacaacactcaaact 4601013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 386
Target Start/End: Complemental strand, 18780791 - 18780673
Alignment:
Q  267 atggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatatacaa 366  Q
    |||||||||||| | |||||||  |||||||| | |||||||| |||| ||||||||||||| |||| ||| |  |||| ||||| |||||||||||||     
T  18780791 atggaggaagtgctaatcatgggcttagtggtcccccatctaggtttt-agtataaatagtagtttccaagccggaaagagggtcgcaaatcatatacag 18780693  T
Q  367 aattcttcaacactcaaact 386  Q
    |||||| |||||||||||||    
T  18780692 aattctacaacactcaaact 18780673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 386
Target Start/End: Original strand, 18522843 - 18522972
Alignment:
Q  258 ttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagat-ttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaa 356  Q
    |||||||| |||||||||||| |||||||||  ||||||||||||||  ||| | ||||||||||||||    |||| |||||  ||| |||||| || |    
T  18522843 ttgtccaagatggaggaagtgttgatcatgggattagtggttcgccagttagttattttagtataaataagtgtttccaagtcggaaaatgggtcgcaga 18522942  T
Q  357 tcatatacaaaattcttcaacactcaaact 386  Q
    |||| || |||||||| |||||||||||||    
T  18522943 tcatttataaaattctacaacactcaaact 18522972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 414
Target Start/End: Complemental strand, 4600854 - 4600822
Alignment:
Q  382 aaactcaaacctgtcgagagacagtgcctttta 414  Q
    |||||||||||||||||||||||||||||||||    
T  4600854 aaactcaaacctgtcgagagacagtgcctttta 4600822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 45047131 - 45047097
Alignment:
Q  75 agagcattacttttcccactctatgtctttcctcg 109  Q
    ||||||||||||||||||| |||||||||||||||    
T  45047131 agagcattacttttcccaccctatgtctttcctcg 45047097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Complemental strand, 18780511 - 18780483
Alignment:
Q  385 ctcaaacctgtcgagagacagtgcctttt 413  Q
    |||||||||||||||||||||||||||||    
T  18780511 ctcaaacctgtcgagagacagtgcctttt 18780483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Original strand, 33129136 - 33129164
Alignment:
Q  385 ctcaaacctgtcgagagacagtgcctttt 413  Q
    |||||||||||||||||||||||||||||    
T  33129136 ctcaaacctgtcgagagacagtgcctttt 33129164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 106 - 384
Target Start/End: Original strand, 8875552 - 8875831
Alignment:
Q  106 ctcgacggaatatcaagcctagagcgaaaaactagattttcgacaaagtaaggctcaaaaagaaaactcacgtcgaagtcaagcaaaagcggggaaagca 205  Q
    |||||||||||||||||||| ||||| | | | |||| |||||||||| |||| | ||| || ||     |||||||||||| ||||||  |||||||||    
T  8875552 ctcgacggaatatcaagcctggagcgcatagccagatcttcgacaaagcaaggttgaaagagcaattatgcgtcgaagtcaatcaaaaggcgggaaagca 8875651  T
Q  206 cgatttcaagcattgaaacagtttccaggtagtggagacgtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtggttcgccat 305  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||||| |||||||||||| ||||||||||||| |||||||| |||    
T  8875652 cgatttcaagcattgaaacggtttccatgtagtggagacgtgggacagacagttgtccaagatggaggaagtgctgatcatggagttggtggttcgtcat 8875751  T
Q  306 cta-gatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatatacaaaattcttcaacactcaaa 384  Q
    ||| | |||||||||||||||||| |||  ||| |  ||||| | || ||||||||||||| |||| | |||||||||||    
T  8875752 ctaggttttttagtataaatagtagttttcaagccggaaagtagatcgcaaatcatatacagaattttacaacactcaaa 8875831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 178 - 386
Target Start/End: Complemental strand, 16925775 - 16925567
Alignment:
Q  178 tcgaagtcaagcaaaagcggggaaagcacgatttcaagcattgaaacagtttccaggtagtggaga-cgtgggacaggaagttgtccaacatggaggaag 276  Q
    |||||| ||||||||||  ||||||||||||||||||||| |||  | ||||||   ||||||| | ||||||||| | |||||||||| ||||||||||    
T  16925775 tcgaagacaagcaaaaggcgggaaagcacgatttcaagcaatgaggcggtttccttttagtggaaaacgtgggacaagtagttgtccaagatggaggaag 16925676  T
Q  277 tgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatatacaaaattcttcaa 376  Q
    || |||||||||  ||||||||||||||||||| |||||||||||||||||| |||| ||| |  |||| ||||| ||||||||||||| | |||| |||    
T  16925675 tgctgatcatgggcttagtggttcgccatctag-tttttagtataaatagtagtttccaagccggaaagagggtcgcaaatcatatacagatttctacaa 16925577  T
Q  377 cactcaaact 386  Q
    ||||||||||    
T  16925576 cactcaaact 16925567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 386
Target Start/End: Complemental strand, 13410052 - 13409932
Alignment:
Q  267 atggaggaagtgatgatcatggagttagtggttcgccatctagat-ttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatataca 365  Q
    |||||||||||| |||||||||  |||||||||||||   ||| | ||||||||||||||    |||| |||||  ||| |||||| |||||||| || |    
T  13410052 atggaggaagtgttgatcatgggattagtggttcgcccgttagttattttagtataaataagtctttccaagtcggaaaatgggtcgcaaatcatttata 13409953  T
Q  366 aaattcttcaacactcaaact 386  Q
     |||||| |||||||||||||    
T  13409952 gaattctacaacactcaaact 13409932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 42710569 - 42710602
Alignment:
Q  76 gagcattacttttcccactctatgtctttcctcg 109  Q
    ||||||||||||||||||||||||| ||||||||    
T  42710569 gagcattacttttcccactctatgtttttcctcg 42710602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 46623089 - 46623053
Alignment:
Q  73 taagagcattacttttcccactctatgtctttcctcg 109  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  46623089 taagagcattatttttcccaccctatgtctttcctcg 46623053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 51540921 - 51540889
Alignment:
Q  77 agcattacttttcccactctatgtctttcctcg 109  Q
    ||||||||||||||||| |||||||||||||||    
T  51540921 agcattacttttcccaccctatgtctttcctcg 51540889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 106 - 386
Target Start/End: Complemental strand, 12418677 - 12418396
Alignment:
Q  106 ctcgacggaatatcaagcctagagcgaaaaactagattttcgacaaagtaaggctcaaaaagaaaactcacgtcgaagtcaagcaaaagcgg-ggaaagc 204  Q
    |||||| ||||||||||||| || || | ||| |||||||||||| ||  ||||||||  || ||   | |||||||||||| |||||| |  ||||| |    
T  12418677 ctcgacagaatatcaagcctggaccgcataacaagattttcgacagagcgaggctcaaggagtaattacgcgtcgaagtcaatcaaaagggcaggaaaac 12418578  T
Q  205 acgatttcaagcattgaaacagtttccaggtagtggagacgtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtggttcgcca 304  Q
    |||||||||| |||| |||| ||||| |||||||| |||| ||||||| | ||||||| || |||||||||||| |||||||||||||||| ||||||||    
T  12418577 acgatttcaatcattaaaacggtttcaaggtagtgaagacatgggacatgcagttgtctaagatggaggaagtgctgatcatggagttagttgttcgcca 12418478  T
Q  305 tctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatatacaaaattcttcaacactcaaact 386  Q
    ||||| |||||||||||||||||| |||| ||| |  |||||||||| ||||||||||||| |||||| |||||||||||||    
T  12418477 tctaggtttttagtataaatagtagtttccaagccggaaagtgggtcgcaaatcatatacagaattctacaacactcaaact 12418396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 106 - 386
Target Start/End: Original strand, 12420969 - 12421250
Alignment:
Q  106 ctcgacggaatatcaagcctagagcgaaaaactagattttcgacaaagtaaggctcaaaaagaaaactcacgtcgaagtcaagcaaaagcgg-ggaaagc 204  Q
    |||||| ||||||||||||| || || | ||| |||||||||||| ||  ||||||||  || ||   | |||||||||||| |||||| |  ||||| |    
T  12420969 ctcgacagaatatcaagcctggaccgcataacaagattttcgacagagcgaggctcaaggagtaattacgcgtcgaagtcaatcaaaagggcaggaaaac 12421068  T
Q  205 acgatttcaagcattgaaacagtttccaggtagtggagacgtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtggttcgcca 304  Q
    |||||||||| |||| |||| ||||| |||||||| |||| ||||||| | ||||||| || |||||||||||| |||||||||||||||| ||||||||    
T  12421069 acgatttcaatcattaaaacggtttcaaggtagtgaagacatgggacatgcagttgtctaagatggaggaagtgctgatcatggagttagttgttcgcca 12421168  T
Q  305 tctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatatacaaaattcttcaacactcaaact 386  Q
    ||||| |||||||||||||||||| |||| ||| |  |||||||||| ||||||||||||| |||||| |||||||||||||    
T  12421169 tctaggtttttagtataaatagtagtttccaagccggaaagtgggtcgcaaatcatatacagaattctacaacactcaaact 12421250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 143 - 386
Target Start/End: Original strand, 23590537 - 23590775
Alignment:
Q  143 tttcgacaaagtaaggctcaaaaagaaaactcacgtcgaagtcaagcaaaagcggggaaagcacgatttcaagcattgaaacagtttccaggtagtggag 242  Q
    ||||||| ||| |||||| ||| || || ||| ||||||||| || ||||||  |||||||||||||||||||||||||||| ||||| | |||||||||    
T  23590537 tttcgacgaagcaaggctgaaagagcaatctcgcgtcgaagttaaacaaaaggcgggaaagcacgatttcaagcattgaaacggtttctatgtagtggag 23590636  T
Q  243 acgtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaa 342  Q
         ||| ||| |||||||||  |||||||||||| |||| ||| |||||| ||||||||||||||| |||| |||||||||  | |||| ||| |  |    
T  23590637 t----ggataggcagttgtccaggatggaggaagtgctgataatgaagttagaggttcgccatctaga-ttttggtataaataagagtttccaagccgga 23590731  T
Q  343 aagtgggtcacaaatcatatacaaaattcttcaacactcaaact 386  Q
     ||||| || ||||||||||||| |||||| |||||||||||||    
T  23590732 tagtggatcgcaaatcatatacagaattctacaacactcaaact 23590775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 143 - 386
Target Start/End: Original strand, 11306521 - 11306766
Alignment:
Q  143 tttcgacaaagtaaggctcaaaaagaaaactcacgtcgaagtcaagcaaaagcg-gggaaagcacgatttcaagcattgaaacagtttccaggtagtgga 241  Q
    ||||||| |||||||||| ||| || |  ||| |||||||| |||||||||| | |||||| |||||| ||||||| |||  ||||||||   |||| ||    
T  11306521 tttcgacgaagtaaggctgaaagagcactctcgcgtcgaagacaagcaaaagagcgggaaaacacgatatcaagcaatgaggcagtttccttttagtaga 11306620  T
Q  242 gac-gtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtca 340  Q
     |  ||||||||   |||||||||| |||||||||||| |||||||||  ||||||  || | |||||| | |||||||||||||||| |||| ||| |     
T  11306621 aaatgtgggacaaatagttgtccaagatggaggaagtgttgatcatgggcttagtgactctctatctagttatttagtataaatagtagtttccaagccg 11306720  T
Q  341 aaaagtgggtcacaaatcatatacaaaattcttcaacactcaaact 386  Q
    ||||||||||| ||||||||||| | |||||| |||||||||||||    
T  11306721 aaaagtgggtcgcaaatcatataaagaattctacaacactcaaact 11306766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 257 - 386
Target Start/End: Original strand, 23010356 - 23010487
Alignment:
Q  257 gttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctaga--tttttagtataaatagtaatttcaaagtcaaaaagtgggtcaca 354  Q
    ||||||||| |||||||||||| ||||||||||||||||| | | |||| |||   |||||||||||||||||| |||| ||| |  ||||  |||||||    
T  23010356 gttgtccaaaatggaggaagtgctgatcatggagttagtgttccaccatttagggttttttagtataaatagtagtttccaagccggaaagaaggtcaca 23010455  T
Q  355 aatcatatacaaaattcttcaacactcaaact 386  Q
    ||||||||| | |||||| |||||||||||||    
T  23010456 aatcatatatagaattctacaacactcaaact 23010487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 386
Target Start/End: Complemental strand, 20229154 - 20229027
Alignment:
Q  259 tgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatc 358  Q
    ||||||| || ||||||||| ||||||||   ||||||||||||||||||| ||||||||| |||||||| || |  || || |||||||||| ||||||    
T  20229154 tgtccaagattgaggaagtgttgatcatgagcttagtggttcgccatctagttttttagtagaaatagtagttccctagccagaaagtgggtcgcaaatc 20229055  T
Q  359 atatacaaaattcttcaacactcaaact 386  Q
    ||||||| ||||||  |||||| |||||    
T  20229054 atatacacaattctaaaacactgaaact 20229027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 386
Target Start/End: Complemental strand, 22123138 - 22123011
Alignment:
Q  259 tgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatc 358  Q
    ||||||| || ||||||||| ||||||||   ||||||||||||||||||| ||||||||| |||||||| || |  || || |||||||||| ||||||    
T  22123138 tgtccaagattgaggaagtgttgatcatgagcttagtggttcgccatctagttttttagtagaaatagtagttccctagccagaaagtgggtcgcaaatc 22123039  T
Q  359 atatacaaaattcttcaacactcaaact 386  Q
    ||||||| ||||||  |||||| |||||    
T  22123038 atatacacaattctaaaacactgaaact 22123011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 386
Target Start/End: Complemental strand, 11988666 - 11988536
Alignment:
Q  256 agttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaa 355  Q
    |||||||||| || || |||||| ||||||||| ||||||||||||| |  ||| |||||||||||||||    |||| ||| |  ||| |||| |||||    
T  11988666 agttgtccaaaattgaagaagtgttgatcatggggttagtggttcgctagttaggtttttagtataaataagtgtttccaagccggaaaatgggccacaa 11988567  T
Q  356 atcatatacaaaattcttcaacactcaaact 386  Q
    ||||| || | |||||| |||||||||||||    
T  11988566 atcatttatagaattctacaacactcaaact 11988536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 426
Target Start/End: Complemental strand, 34501169 - 34501127
Alignment:
Q  385 ctcaaacctgtcgagagacagtgccttttact-tcaaactcgt 426  Q
    ||||||| |||||||||||||||||||||||| ||||||||||    
T  34501169 ctcaaacttgtcgagagacagtgccttttactatcaaactcgt 34501127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 7412678 - 7412711
Alignment:
Q  76 gagcattacttttcccactctatgtctttcctcg 109  Q
    |||||||||||||||||| |||||||||||||||    
T  7412678 gagcattacttttcccaccctatgtctttcctcg 7412711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0501 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0501
Description:

Target: scaffold0501; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 143 - 386
Target Start/End: Complemental strand, 8936 - 8694
Alignment:
Q  143 tttcgacaaagtaaggctcaaaaagaaaactcacgtcgaagtcaagcaaaagcggggaaagcacgatttcaagcattgaaacagtttccaggtagtggag 242  Q
    ||||||| ||| |||||| ||| || || ||| | || ||||||| ||||||   |||||||||||||||||||||||||||  ||| || |||||||||    
T  8936 tttcgacgaagcaaggctgaaagagtaatctcgcatctaagtcaatcaaaaggcaggaaagcacgatttcaagcattgaaacgatttacatgtagtggag 8837  T
Q  243 acgtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaa 342  Q
    |||||||||||| |||||||||| | |||||||||| ||||||||||||||||||||| ||||||||  ||||||||||||||  | |||| ||| |  |    
T  8836 acgtgggacaggcagttgtccaagacggaggaagtgctgatcatggagttagtggttcaccatctag-gttttagtataaataagagtttccaagccgga 8738  T
Q  343 aagtgggtcacaaatcatatacaaaattcttcaacactcaaact 386  Q
    ||||||||| ||||||||||||| || ||| ||||||| |||||    
T  8737 aagtgggtcgcaaatcatatacagaactctacaacacttaaact 8694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 176 - 386
Target Start/End: Complemental strand, 17132854 - 17132643
Alignment:
Q  176 cgtcgaagtcaagcaaaagcggggaaagcacgatttcaagcattgaaacagtttccaggtagtggaga-cgtgggacaggaagttgtccaacatggagga 274  Q
    |||||||  |||||||||| | ||  ||||||||||||||||  ||| | ||||||   ||||||| | |||||| || |  ||||||||| ||||| ||    
T  17132854 cgtcgaacacaagcaaaagggtggggagcacgatttcaagcaaggaatcggtttccttttagtggaaaacgtggggcaagtggttgtccaagatggaaga 17132755  T
Q  275 agtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatatacaaaattcttc 374  Q
    |||| |||||||||||||||||||||||||||||| || ||||||||||||||| |||| ||| ||||||||||||| |||||||||||||||||||| |    
T  17132754 agtgctgatcatggagttagtggttcgccatctagtttattagtataaatagtagtttccaagccaaaaagtgggtcgcaaatcatatacaaaattctac 17132655  T
Q  375 aacactcaaact 386  Q
    ||||||||||||    
T  17132654 aacactcaaact 17132643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 243 - 386
Target Start/End: Complemental strand, 15125381 - 15125238
Alignment:
Q  243 acgtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaa 342  Q
    |||||||||| | |||||||||| |||||||||||| |||||||||  ||||||||| ||||||||| |||||||||||||||||| |||| |||    |    
T  15125381 acgtgggacaagtagttgtccaagatggaggaagtgttgatcatgggcttagtggtttgccatctagttttttagtataaatagtagtttccaagctgga 15125282  T
Q  343 aagtgggtcacaaatcatatacaaaattcttcaacactcaaact 386  Q
    ||||||||| ||||||||||||| |||||| |||||||||||||    
T  15125281 aagtgggtcgcaaatcatatacagaattctacaacactcaaact 15125238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 267 - 386
Target Start/End: Complemental strand, 17140370 - 17140251
Alignment:
Q  267 atggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatatacaa 366  Q
    ||||| |||||  |||||||||||| ||||||||||||||||| || ||||||||| ||||| |||| ||| || |||||||||  ||||||||||||||    
T  17140370 atggaagaagtcctgatcatggagtcagtggttcgccatctagtttattagtataagtagtagtttccaagccagaaagtgggttgcaaatcatatacaa 17140271  T
Q  367 aattcttcaacactcaaact 386  Q
    |||||| |||||||||||||    
T  17140270 aattctacaacactcaaact 17140251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 178 - 386
Target Start/End: Original strand, 7404300 - 7404509
Alignment:
Q  178 tcgaagtcaagcaaaagcggggaaagcacgatttcaagcattgaaacagtttccaggtagtggaga-cgtgggacaggaagttgtccaacatggaggaag 276  Q
    |||||| |||||||||| | || |||||||||||||||||  ||| ||||||||   ||||||| | ||||||||| |   | ||| || ||||| ||||    
T  7404300 tcgaagacaagcaaaagggcggtaagcacgatttcaagcaaagaagcagtttccttttagtggaaaacgtgggacaagtgatggtctaagatggaagaag 7404399  T
Q  277 tgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatatacaaaattcttcaa 376  Q
    || |||| ||||  |||||||||| |||||||| |||||| ||||||||||| |||   || | ||||| ||||| ||||||||||||| |||||| |||    
T  7404400 tgttgattatgggcttagtggttcaccatctaggtttttattataaatagtagtttactagccgaaaagagggtcgcaaatcatatacagaattctacaa 7404499  T
Q  377 cactcaaact 386  Q
    |||| |||||    
T  7404500 cactgaaact 7404509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 325
Target Start/End: Complemental strand, 14961398 - 14961329
Alignment:
Q  256 agttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaata 325  Q
    |||||||||| |||||||||||| ||||||||| |||||||||||| ||  ||| ||||||||| |||||    
T  14961398 agttgtccaagatggaggaagtgttgatcatggggttagtggttcgtcagttaggtttttagtagaaata 14961329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 325
Target Start/End: Complemental strand, 15390870 - 15390801
Alignment:
Q  256 agttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaata 325  Q
    |||||||||| |||||||||||| ||||||||| |||||||||||| ||  ||| ||||||||| |||||    
T  15390870 agttgtccaagatggaggaagtgttgatcatggggttagtggttcgtcagttaggtttttagtagaaata 15390801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 426
Target Start/End: Complemental strand, 15125088 - 15125043
Alignment:
Q  381 caaactcaaacctgtcgagagacagtgccttttacttcaaactcgt 426  Q
    |||||||||||||||||||||||| ||||||||  |||||||||||    
T  15125088 caaactcaaacctgtcgagagacaatgcctttttattcaaactcgt 15125043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 14961113 - 14961080
Alignment:
Q  385 ctcaaacctgtcgagagacagtgccttttacttc 418  Q
    ||||||||||||||||||||||| ||||||||||    
T  14961113 ctcaaacctgtcgagagacagtgtcttttacttc 14961080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 15390585 - 15390552
Alignment:
Q  385 ctcaaacctgtcgagagacagtgccttttacttc 418  Q
    ||||||||||||||||||||||| ||||||||||    
T  15390585 ctcaaacctgtcgagagacagtgtcttttacttc 15390552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Original strand, 7404669 - 7404697
Alignment:
Q  385 ctcaaacctgtcgagagacagtgcctttt 413  Q
    |||||||||||||||||||||||||||||    
T  7404669 ctcaaacctgtcgagagacagtgcctttt 7404697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Complemental strand, 17140087 - 17140059
Alignment:
Q  385 ctcaaacctgtcgagagacagtgcctttt 413  Q
    |||||||||||||||||||||||||||||    
T  17140087 ctcaaacctgtcgagagacagtgcctttt 17140059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Original strand, 17881258 - 17881286
Alignment:
Q  385 ctcaaacctgtcgagagacagtgcctttt 413  Q
    |||||||||||||||||||||||||||||    
T  17881258 ctcaaacctgtcgagagacagtgcctttt 17881286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 144 - 386
Target Start/End: Original strand, 24477567 - 24477810
Alignment:
Q  144 ttcgacaaagtaaggctcaaaaagaaaactcacgtcgaagtcaagcaaaagcggggaaagcacgatttcaagcattgaaacagtttccaggtagtggaga 243  Q
    |||||||| |||||||| ||| ||||   || |||||||| |||| ||||| | || |||||||||||||||||  ||| | |||||||  ||||||| |    
T  24477567 ttcgacaatgtaaggctgaaagagaagtttcgcgtcgaagacaagaaaaagggcgggaagcacgatttcaagcaaagaagcggtttccatttagtggaaa 24477666  T
Q  244 -cgtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaa 342  Q
     ||||||||| |   |||||||| ||||||||||||||||||||||  |||||||||| |||||||| ||||| |||||||||||| |||| ||| |  |    
T  24477667 acgtgggacaagtgattgtccaagatggaggaagtgatgatcatgggcttagtggttcaccatctaggttttttgtataaatagtagtttccaagccgga 24477766  T
Q  343 aagtgggtcacaaatcatatacaaaattcttcaacactcaaact 386  Q
    |||||||||||| |||||||||| |||||| |||||||||||||    
T  24477767 aagtgggtcacagatcatatacagaattctacaacactcaaact 24477810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 197 - 357
Target Start/End: Original strand, 22738262 - 22738423
Alignment:
Q  197 gggaaagcacgatttcaagcattgaaacagtttccaggtagtggagac-gtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagt 295  Q
    ||||||||||||||||||||| |||  | ||||||   ||||||| |  |||||||| | |||||||||| || ||||||||| |||||||||  |||||    
T  22738262 gggaaagcacgatttcaagcaatgaggcggtttccttttagtggaaaatgtgggacaagtagttgtccaagatagaggaagtgctgatcatgggcttagt 22738361  T
Q  296 ggttcgccatctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaat 357  Q
    |||||  ||||||| |||||||||||||||||| |||| ||| |  ||||||||||||||||    
T  22738362 ggttcatcatctaggtttttagtataaatagtagtttccaagccggaaagtgggtcacaaat 22738423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 197 - 386
Target Start/End: Original strand, 920979 - 921166
Alignment:
Q  197 gggaaagcacgatttcaagcattgaaacagtttccaggtagtggagacgtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtg 296  Q
    |||||||||||||||||||| | ||||| ||||||   ||||||| ||||||| || | | |||||||| |||||||||||   |||||||| |||||||    
T  920979 gggaaagcacgatttcaagcttggaaacggtttcct--tagtggaaacgtggggcaagcacttgtccaagatggaggaagttccgatcatggggttagtg 921076  T
Q  297 gttcgccatctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatatacaaaattcttcaacactcaaact 386  Q
    |||  |||  ||| |||||||||||||||    |||| ||| |  ||| |||||| ||||||||||||| |||||| |||||||||||||    
T  921077 gttatccagttaggtttttagtataaataagtgtttccaagcctgaaaatgggtctcaaatcatatacataattctacaacactcaaact 921166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 386
Target Start/End: Complemental strand, 22264306 - 22264095
Alignment:
Q  176 cgtcgaagtcaagcaaaagcggggaaagcacgatttcaagcattgaaacagtttccaggtagtggaga-cgtgggacaggaagttgtccaacatggagga 274  Q
    |||||||| |||||||||| | || |||||||||||||||||  ||| | ||||||   ||||||| | ||||||||| |   | ||  || ||||||||    
T  22264306 cgtcgaagacaagcaaaagggcgggaagcacgatttcaagcaaagaagcggtttccttttagtggaaaacgtgggacaagtgatggtataagatggagga 22264207  T
Q  275 agtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatatacaaaattcttc 374  Q
    |||| |||||||||  ||||||||||  |||||||  ||||||||||||||| | |||| ||| |  |||| || || |||| ||||||||  ||||| |    
T  22264206 agtgctgatcatgggcttagtggttcaacatctaggattttagtataaatagcactttccaagccggaaagaggatcgcaaaacatatacagtattctac 22264107  T
Q  375 aacactcaaact 386  Q
    ||| ||||||||    
T  22264106 aactctcaaact 22264095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 386
Target Start/End: Complemental strand, 9007158 - 9007028
Alignment:
Q  257 gttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagat-ttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaa 355  Q
    ||||||||| |||||||||||| |||||||||  ||||||||||||||  ||| |  |||||||||||||    |||| ||| || ||| |||||| |||    
T  9007158 gttgtccaagatggaggaagtgctgatcatgggattagtggttcgccagttagttagtttagtataaataactgtttccaagccagaaaatgggtcgcaa 9007059  T
Q  356 atcatatacaaaattcttcaacactcaaact 386  Q
    ||||| || | |||||| |||||||||||||    
T  9007058 atcatttatagaattctacaacactcaaact 9007028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 22739056 - 22739092
Alignment:
Q  349 gtcacaaatcatatacaaaattcttcaacactcaaac 385  Q
    |||||||||||||||||||||||| ||||||||||||    
T  22739056 gtcacaaatcatatacaaaattctacaacactcaaac 22739092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 418
Target Start/End: Original strand, 15927646 - 15927675
Alignment:
Q  389 aacctgtcgagagacagtgccttttacttc 418  Q
    ||||||||||||||||||||||||||||||    
T  15927646 aacctgtcgagagacagtgccttttacttc 15927675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 22815086 - 22815045
Alignment:
Q  381 caaactcaaacctgtcgagagacagtgccttttacttcaaac 422  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  22815086 caaactcaaacctgtcgagagacaatgccttttctttcaaac 22815045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Complemental strand, 23818103 - 23818075
Alignment:
Q  385 ctcaaacctgtcgagagacagtgcctttt 413  Q
    |||||||||||||||||||||||||||||    
T  23818103 ctcaaacctgtcgagagacagtgcctttt 23818075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 9e-40; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 176 - 386
Target Start/End: Complemental strand, 11324027 - 11323816
Alignment:
Q  176 cgtcgaagtcaagcaaaagcggggaaagcacgatttcaagcattgaaacagtttccaggtagtggaga-cgtgggacaggaagttgtccaacatggagga 274  Q
    |||||||| |||||||||| | || |||||||||||||||||  ||| | ||||||   ||||||| | |||||| || |  ||||||||| ||||| ||    
T  11324027 cgtcgaagacaagcaaaagggcgggaagcacgatttcaagcaaggaagcggtttccttttagtggaaaacgtggggcaagtggttgtccaagatggaaga 11323928  T
Q  275 agtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatatacaaaattcttc 374  Q
    |||| ||||||| ||||||||||||| |||||||| | ||||||||||||| || |||| |||||  |||||||||| ||||||||||||| ||||||||    
T  11323927 agtgttgatcattgagttagtggttcaccatctagttatttagtataaataatagtttccaagtcggaaagtgggtcgcaaatcatatacataattcttc 11323828  T
Q  375 aacactcaaact 386  Q
    ||||||||||||    
T  11323827 aacactcaaact 11323816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 165 - 386
Target Start/End: Original strand, 20478078 - 20478299
Alignment:
Q  165 aagaaaactcacgtcgaagtcaagcaa--aagcggggaaagcacgatttcaagcattgaaacagtttccaggtagtggagacgtgggacaggaagttgtc 262  Q
    |||||| ||| ||||||||||||||||  |||  |||||||||||||||||||||| || || ||||||   ||||||| |||| || ||    ||||||    
T  20478078 aagaaagctcgcgtcgaagtcaagcaatgaaggagggaaagcacgatttcaagcatcgagacggtttcctt-tagtgga-acgtagggcaatcggttgtc 20478175  T
Q  263 caacatggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatat 362  Q
    ||| |||||| ||||| |||||||||  ||||||||||||||||||| | |||||||||||||  | |||| |||    ||| |||||| ||||||||||    
T  20478176 caagatggagaaagtgctgatcatgggtttagtggttcgccatctaggtgtttagtataaataagagtttccaagctggaaaatgggtcgcaaatcatat 20478275  T
Q  363 acaaaattcttcaacactcaaact 386  Q
    ||| |||||| |||||||||||||    
T  20478276 acataattctacaacactcaaact 20478299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 243 - 386
Target Start/End: Complemental strand, 22803147 - 22803003
Alignment:
Q  243 acgtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagatttt-tagtataaatagtaatttcaaagtcaa 341  Q
    |||||||||| |  ||||||||| ||||| |||||||||||||||| |||||||||||| ||| ||| |||| |||||||||||    |||| |||||      
T  22803147 acgtgggacaagcggttgtccaagatggacgaagtgatgatcatggggttagtggttcgtcatttaggttttctagtataaataagtgtttccaagtcgg 22803048  T
Q  342 aaagtgggtcacaaatcatatacaaaattcttcaacactcaaact 386  Q
    ||| |||||| |||||||| || |||||||| |||||||||||||    
T  22803047 aaaatgggtcgcaaatcatttataaaattctacaacactcaaact 22803003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 197 - 325
Target Start/End: Original strand, 25568365 - 25568493
Alignment:
Q  197 gggaaagcacgatttcaagcattgaaacagtttccaggtagtggagacgtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtg 296  Q
    ||||||||||||||| ||||||| | || ||||||   ||||||| | ||||| || |  ||||||||| |||||| ||||| ||||||||| |||||||    
T  25568365 gggaaagcacgattttaagcattaagacggtttcctt-tagtggaaatgtggggcaagcggttgtccaagatggagaaagtgctgatcatggggttagtg 25568463  T
Q  297 gttcgccatcta-gatttttagtataaata 325  Q
    |||||||||||| | |||||||||||||||    
T  25568464 gttcgccatctaggttttttagtataaata 25568493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 386
Target Start/End: Complemental strand, 13822156 - 13822043
Alignment:
Q  273 gaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatatacaaaattct 372  Q
    |||||| ||||||||| |||||||||||||||  ||| |||||||||||||||    |||| ||| |  ||| ||| || |||||||| || | ||||||    
T  13822156 gaagtgctgatcatggggttagtggttcgccagttaggtttttagtataaataagtgtttccaagccggaaaatggatcgcaaatcatttatagaattct 13822057  T
Q  373 tcaacactcaaact 386  Q
     |||||||||||||    
T  13822056 acaacactcaaact 13822043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 416
Target Start/End: Original strand, 25568658 - 25568689
Alignment:
Q  385 ctcaaacctgtcgagagacagtgccttttact 416  Q
    ||||||||||||||||||||||||||||||||    
T  25568658 ctcaaacctgtcgagagacagtgccttttact 25568689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 36874920 - 36874954
Alignment:
Q  75 agagcattacttttcccactctatgtctttcctcg 109  Q
    ||||||||||||||||||| |||||||||||||||    
T  36874920 agagcattacttttcccaccctatgtctttcctcg 36874954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 30216125 - 30216088
Alignment:
Q  72 ataagagcattacttttcccactctatgtctttcctcg 109  Q
    |||||||  |||||||||||||||||||||||||||||    
T  30216125 ataagagtgttacttttcccactctatgtctttcctcg 30216088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Complemental strand, 11323660 - 11323632
Alignment:
Q  385 ctcaaacctgtcgagagacagtgcctttt 413  Q
    |||||||||||||||||||||||||||||    
T  11323660 ctcaaacctgtcgagagacagtgcctttt 11323632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 76864 - 76988
Alignment:
Q  200 aaagcacgatttcaagcattgaaacagtttccaggtagtggagacgtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtggtt 299  Q
    |||||||||||||||| | |||||| ||||||| ||| |||||||||| |||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  76864 aaagcacgatttcaagaaatgaaacggtttccaagtaatggagacgtgcgacaggaaattgtccaatatggagaaagtgatgatcatggagttagtggtt 76963  T
Q  300 cgccatctagatttttagtataaata 325  Q
    ||||||||||  ||||||||||||||    
T  76964 cgccatctag-gttttagtataaata 76988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 246 - 386
Target Start/End: Original strand, 12132 - 12272
Alignment:
Q  246 tgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaaaag 345  Q
    ||||||| | |||||||||| |||||| ||||| |||||||||  ||||||||||||||||||||||||||||||||||| |||| || ||| |  |||     
T  12132 tgggacaagtagttgtccaagatggagtaagtgctgatcatgggcttagtggttcgccatctagatttttagtataaatattaatatccaagccggaaat 12231  T
Q  346 tgggtcacaaatcatatacaaaattcttcaacactcaaact 386  Q
    |||||| |||||||||||||||||||| ||||||| |||||    
T  12232 tgggtcgcaaatcatatacaaaattctacaacacttaaact 12272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 173 - 386
Target Start/End: Complemental strand, 269883 - 269668
Alignment:
Q  173 tcacgtcgaagtcaagcaaaagcggggaaagcacgatttcaagcattgaaacagtttccaggtagtggaga-cgtgggacaggaagttgtccaacatgga 271  Q
    ||||||||||| |||| |||||  |||||||||||||||||||||  || || ||||||   || |||| | ||||||||| | || ||||||| |||||    
T  269883 tcacgtcgaagacaagaaaaaggtgggaaagcacgatttcaagcaaagagacggtttcctattaatggaaaacgtgggacaagtagctgtccaagatgga 269784  T
Q  272 ggaagtgatgatcatggagttagtggttcgccatctag-atttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatatacaaaatt 370  Q
    ||||||| ||| |||||  |||||||||||||||||||  |||||||||||||||||| |||| |||    ||||||||| |||||||||||| | ||||    
T  269783 ggaagtgctgaacatgggcttagtggttcgccatctagtttttttagtataaatagtagtttccaagatggaaagtgggttacaaatcatatatagaatt 269684  T
Q  371 cttcaacactcaaact 386  Q
    || ||| |||||||||    
T  269683 ctacaatactcaaact 269668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 235 - 386
Target Start/End: Complemental strand, 17987731 - 17987580
Alignment:
Q  235 tagtggagacgtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttca 334  Q
    ||||||| ||||||| || | |||||||||| |||||||||||| ||||||||| |||||||||||||||  ||| |||||||||||||||    ||||     
T  17987731 tagtggaaacgtggggcaagcagttgtccaaaatggaggaagtgctgatcatggggttagtggttcgccagttaggtttttagtataaataagtgtttcc 17987632  T
Q  335 aagtcaaaaagtgggtcacaaatcatatacaaaattcttcaacactcaaact 386  Q
    ||| |  |||||||||| ||||||||||||| ||||||  ||||||||||||    
T  17987631 aagccggaaagtgggtcgcaaatcatatacagaattctaaaacactcaaact 17987580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 257 - 382
Target Start/End: Complemental strand, 16075795 - 16075669
Alignment:
Q  257 gttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctaga-tttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaa 355  Q
    ||||||||| |||||||||||| |||||||||||||| |||| | |||| |||  |||||||||||||||||| |||  ||| |  |||| ||||| |||    
T  16075795 gttgtccaaaatggaggaagtgttgatcatggagttaatggtccaccatttagggtttttagtataaatagtagtttacaagccggaaagagggtcgcaa 16075696  T
Q  356 atcatatacaaaattcttcaacactca 382  Q
    |||||||||| |||||| |||||||||    
T  16075695 atcatatacataattctacaacactca 16075669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 386
Target Start/End: Original strand, 23779018 - 23779121
Alignment:
Q  283 tcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatatacaaaattcttcaacactca 382  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||||| |||| |||     || | |||| ||||||||||| | |||||| |||||||||    
T  23779018 tcatggagttagtggttcgccatttaggtttttattataaatagtagtttccaagctgggaaataggtcgcaaatcatatatagaattctacaacactca 23779117  T
Q  383 aact 386  Q
    ||||    
T  23779118 aact 23779121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 386
Target Start/End: Original strand, 23865971 - 23866074
Alignment:
Q  283 tcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatatacaaaattcttcaacactca 382  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||||| |||| |||     || | |||| ||||||||||| | |||||| |||||||||    
T  23865971 tcatggagttagtggttcgccatttaggtttttattataaatagtagtttccaagctgggaaataggtcgcaaatcatatatagaattctacaacactca 23866070  T
Q  383 aact 386  Q
    ||||    
T  23866071 aact 23866074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 22969307 - 22969360
Alignment:
Q  235 tagtggagacgtgggacaggaagttgtccaacatggaggaagtgatgatcatgg 288  Q
    ||||||| |||||||| | | |||||||||| |||||||||||| |||||||||    
T  22969307 tagtggaaacgtgggataagcagttgtccaagatggaggaagtgttgatcatgg 22969360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 386
Target Start/End: Complemental strand, 17485 - 17334
Alignment:
Q  235 tagtggagacgtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttca 334  Q
    ||||||| ||||||| || |  ||||||||| ||||||||||||  ||| |||| |||||||||||||||  ||| |||||||||||||||    ||||     
T  17485 tagtggaaacgtggggcaagcggttgtccaagatggaggaagtgccgataatggggttagtggttcgccagttaggtttttagtataaataagtgtttcc 17386  T
Q  335 aagtcaaaaagtgggtcacaaatcatatacaaaattcttcaacactcaaact 386  Q
    ||| |  ||| |||||||||| ||||||| | |||||| |||||||||||||    
T  17385 aagccggaaaatgggtcacaactcatatatagaattctacaacactcaaact 17334  T

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Target: scaffold0004 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 176 - 304
Target Start/End: Original strand, 357648 - 357777
Alignment:
Q  176 cgtcgaagtcaagcaaaagcggggaaagcacgatttcaagcattgaaacagtttccaggtagtgg-agacgtgggacaggaagttgtccaacatggagga 274  Q
    |||||||| ||||||||||   ||||||||||||||||||||  || |||||||||    ||||| | |||||||||| | ||||||| || ||||||||    
T  357648 cgtcgaagacaagcaaaaggcaggaaagcacgatttcaagcaaggagacagtttcctttgagtggaaaacgtgggacaagtagttgtctaagatggagga 357747  T
Q  275 agtgatgatcatggagttagtggttcgcca 304  Q
    |||| |||||||||  ||||||||||||||    
T  357748 agtgttgatcatgggcttagtggttcgcca 357777  T

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Target: scaffold0056 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 267 - 386
Target Start/End: Original strand, 54371 - 54490
Alignment:
Q  267 atggaggaagtgatgatcatggagttagtggttcgccatctagatttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaaatcatatacaa 366  Q
    |||||| ||| | |||||||||  |||||||||| |||||||| ||| |||||||||||||| |||| ||| |  ||||  ||||||||||||||||||     
T  54371 atggagaaagggctgatcatgggcttagtggttcaccatctaggtttgtagtataaatagtagtttccaagccggaaagaaggtcacaaatcatatacag 54470  T
Q  367 aattcttcaacactcaaact 386  Q
    |||||  || ||||||||||    
T  54471 aattcgacagcactcaaact 54490  T

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Target: scaffold0065 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 325
Target Start/End: Original strand, 14542 - 14669
Alignment:
Q  197 gggaaagcacgatttcaagcattgaaacagtttccaggtagtggagacgtgggacaggaagttgtccaacatggaggaagtgatgatcatggagttagtg 296  Q
    ||||||||| ||||||||||||  | ||||||| |   ||||||| ||||||| || | || ||||||| ||||| |||||| ||||||||  |||||||    
T  14542 gggaaagcatgatttcaagcataaagacagttttctt-tagtggaaacgtggggcaagcagctgtccaagatggacgaagtgttgatcatgaggttagtg 14640  T
Q  297 gttcgccatctagatttttagtataaata 325  Q
    |||||  |  |||||||||||||||||||    
T  14641 gttcgttagttagatttttagtataaata 14669  T

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Target: scaffold0170 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 1501 - 1454
Alignment:
Q  257 gttgtccaacatggaggaagtgatgatcatggagttagtggttcgcca 304  Q
    ||||||||| |||||||||||| ||||||||| |||||||||||||||    
T  1501 gttgtccaagatggaggaagtggtgatcatggggttagtggttcgcca 1454  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 386
Target Start/End: Original strand, 12809861 - 12809992
Alignment:
Q  257 gttgtccaacatggaggaagtgatgatcatggagttagtggttcgccatctagat-ttttagtataaatagtaatttcaaagtcaaaaagtgggtcacaa 355  Q
    ||||||||| |||||||||||| |||||||||  ||||||||||| ||  ||  | ||||||||||||||    |||| |||||| ||| |||||| |||    
T  12809861 gttgtccaagatggaggaagtgctgatcatgggattagtggttcgacagttacttattttagtataaataagtgtttccaagtcagaaaatgggtcgcaa 12809960  T
Q  356 atcatataca-aaattcttcaacactcaaact 386  Q
    | ||| || | ||||||| |||||||||||||    
T  12809961 accatttatagaaattctacaacactcaaact 12809992  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Original strand, 11889647 - 11889675
Alignment:
Q  385 ctcaaacctgtcgagagacagtgcctttt 413  Q
    |||||||||||||||||||||||||||||    
T  11889647 ctcaaacctgtcgagagacagtgcctttt 11889675  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 35420715 - 35420747
Alignment:
Q  77 agcattacttttcccactctatgtctttcctcg 109  Q
    ||||||||||||||||| |||||||||||||||    
T  35420715 agcattacttttcccaccctatgtctttcctcg 35420747  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Complemental strand, 38286 - 38258
Alignment:
Q  385 ctcaaacctgtcgagagacagtgcctttt 413  Q
    |||||||||||||||||||||||||||||    
T  38286 ctcaaacctgtcgagagacagtgcctttt 38258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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