View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3634_high_16 (Length: 347)
Name: NF3634_high_16
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3634_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 15694883 - 15694565
Alignment:
| Q |
19 |
gtctgccttctgacacaatggagtgctccggactggagttgcggtgataacggctgcaatagctggagctcactgtggaagctgagcggctactacatgt |
118 |
Q |
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| T |
15694883 |
gtctgccttctgacacagtggagtgctccggactggagtagcggtgataacggctgcaatagctggagctcactgtggaagcggagcggctactacatgt |
15694784 |
T |
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| Q |
119 |
ctacatccatgattggccaaatgtgactgcacccttatttttagactgttacaagattaatttggggtttcgatgaggaataaatagattttcatgttgc |
218 |
Q |
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| T |
15694783 |
ctacatccatgattggccaaatgtgactgcacccttatttttagactgttacaagattaatttggggtttcgatgatgaataaatagattttcatgatgc |
15694684 |
T |
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| Q |
219 |
ttaaactttgatttgagttttgatgttttgttaccataagctttagaaagtgtttgtttccttgacttttgttggtatttaacagtgtgttttgcttaag |
318 |
Q |
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| T |
15694683 |
ttaaactttgatttgagttttgatgttttgttactataagctttagaaagtgtttgtttccttgacttttgttggtatttaccagtatgttttgcttaag |
15694584 |
T |
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| Q |
319 |
acttgtgcttttacctttg |
337 |
Q |
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| T |
15694583 |
acttgtgcttttacttttg |
15694565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 49442700 - 49442750
Alignment:
| Q |
275 |
tttccttgacttttgttggtatttaacagtgtgttttgcttaagacttgtg |
325 |
Q |
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| T |
49442700 |
tttcgttgacttttgttggtatttaaatgtatgttttgattaagacttgtg |
49442750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 829778 - 829722
Alignment:
| Q |
269 |
tgtttgtttccttgacttttgttggtatttaacagtgtgttttgcttaagacttgtg |
325 |
Q |
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| T |
829778 |
tgtttgtttccgtgaattttgttgatatttataagtatgttttgctcaagacttgtg |
829722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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