View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3634_high_17 (Length: 321)
Name: NF3634_high_17
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3634_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 4 - 305
Target Start/End: Complemental strand, 24650263 - 24649957
Alignment:
| Q |
4 |
aaaattagtgggctatacaagccatccctagttataacattacaat----agattatttttacagagagttgcaatacgcaactagcnnnnnnnnaacaa |
99 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||| ||||||| ||||| |
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| T |
24650263 |
aaaattagtggggtatacaagccatccctagttataacattgcaatgtgtagattatttttac---gagttgcaatacgtaactagcttttttttaacaa |
24650167 |
T |
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| Q |
100 |
atcaaaataaaatatattaaccactaaaagaattctacaaaatgaacggattagaactcaagtgtatta--aaagttacacacga--ccacaacaatgaa |
195 |
Q |
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||| |||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||| | |||||||||||| | | ||||||||||| |
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| T |
24650166 |
atccaaataaaatatattaaccacaaaaagaattctactaaataaacggattagaactcaagtgtccgagaaaagttacacacaaaactacaacaatgaa |
24650067 |
T |
|
| Q |
196 |
accaataaatcacacatgccaagtgactaaactcaaatacattaacatattcacagaagcaatgtgcaactaacttaaaaccagaaaatgggaaatccta |
295 |
Q |
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|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24650066 |
acgaataaatcacacataccaagtgactaaactcaaatacattaacatattcacagaagcaatgtgcaactaacttaaaaccagaaaatgggaaatccta |
24649967 |
T |
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| Q |
296 |
ttggaagtgt |
305 |
Q |
| |
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|||||||||| |
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| T |
24649966 |
ttggaagtgt |
24649957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 151 - 295
Target Start/End: Complemental strand, 24656587 - 24656441
Alignment:
| Q |
151 |
tagaactcaagtgtattaaaagttacacacga--ccacaacaatgaaaccaataaatcacacatgccaagtgactaaactcaaatacattaacatattca |
248 |
Q |
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||||||| ||| ||| ||||||||||||| | |||||||||||||||||||||| |||||| || ||||||||||||| ||||||||||||||||||| |
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| T |
24656587 |
tagaactaaagagtacgaaaagttacacacaaaaccacaacaatgaaaccaataaagcacacaagctaagtgactaaactaaaatacattaacatattca |
24656488 |
T |
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| Q |
249 |
cagaagcaatgtgcaactaacttaaaaccagaaaatgggaaatccta |
295 |
Q |
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|| ||||||||| ||||||||||||||||| |||||| ||||||||| |
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| T |
24656487 |
cacaagcaatgtacaactaacttaaaaccataaaatgtgaaatccta |
24656441 |
T |
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