View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3634_high_19 (Length: 291)
Name: NF3634_high_19
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3634_high_19 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 64261 - 64419
Alignment:
| Q |
16 |
atgaacattgatcacattgtcattagtgccgcccaagcatgaatacacacaaagacacactctattggtttatcattttttacactccaaatcagatttt |
115 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
64261 |
atgaacattgatcacattgacattagtgccgcccaagcatgaatacacacaaagacacactctattggtttattattttttacactccaaatcagatttt |
64360 |
T |
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| Q |
116 |
cctccatagataaagagtaagaaatcgaatatatggctatctgtttaatagagtaccac |
174 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
64361 |
cctccatagataaagagtaagaaatcgaatatatgactatctgtttaatagaggaccac |
64419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 287
Target Start/End: Original strand, 64495 - 64530
Alignment:
| Q |
252 |
tagagaagggacagaaagcgactactgttatatttg |
287 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
64495 |
tagagaagggacagaaagcgactactgttatatttg |
64530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 40908833 - 40908675
Alignment:
| Q |
16 |
atgaacattgatcacattgtcattagtgccgcccaagcatgaatacacacaaagacacactctattggtttatcattttttacactccaaatcagatttt |
115 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40908833 |
atgaacattgatcacattgacattagtgccgcccaagcatgaatacacacaaagacacactctattggtttattattttttacactccaaatcagatttt |
40908734 |
T |
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| Q |
116 |
cctccatagataaagagtaagaaatcgaatatatggctatctgtttaatagagtaccac |
174 |
Q |
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| T |
40908733 |
cctccatagataaagagtaagaaatcgaatatatgactatctgtttaatagaggaccac |
40908675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 287
Target Start/End: Complemental strand, 40908599 - 40908564
Alignment:
| Q |
252 |
tagagaagggacagaaagcgactactgttatatttg |
287 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
40908599 |
tagagaagggacagaaagcgactactgttatatttg |
40908564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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