View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3634_high_23 (Length: 263)
Name: NF3634_high_23
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3634_high_23 |
 | |
|
| [»] scaffold0692 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 20)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 11048865 - 11048631
Alignment:
| Q |
20 |
ctagtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11048865 |
ctagtacagattacaaaggtgaagaatttaaagcactagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattc |
11048766 |
T |
|
| Q |
120 |
agagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgatt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11048765 |
agagcatccaaaaacattggaccttggtgataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgatt |
11048666 |
T |
|
| Q |
220 |
attcattgtgatctaaaggcaagtaatgttcttct |
254 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
11048665 |
attcattgtgatctaaagccaagtaatgttcttct |
11048631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 10216957 - 10216723
Alignment:
| Q |
20 |
ctagtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattc |
119 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10216957 |
ctagtacaaactacaaaggtcaagaatttaaagctctagttttttattacatgaaaaatggaagcttagaacaatggttgcatcctgagattttaaattc |
10216858 |
T |
|
| Q |
120 |
agagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgatt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10216857 |
agagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttcggcattacattatctgcatcaagaatgtgagcaattgatt |
10216758 |
T |
|
| Q |
220 |
attcattgtgatctaaaggcaagtaatgttcttct |
254 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| |
|
|
| T |
10216757 |
attcattgtgatctaaagccaagcaatgttcttct |
10216723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 10604753 - 10604981
Alignment:
| Q |
20 |
ctagtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattc |
119 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
10604753 |
ctagtacagattacaaaggtcaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatcctgagattttaaatgc |
10604852 |
T |
|
| Q |
120 |
agagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgatt |
219 |
Q |
| |
|
||||| ||||| ||| |||||||||||| | || || ||||||||| | ||||||||||||||||| |||||||| |||||||||||||||||||| | |
|
|
| T |
10604853 |
agagcctccaacaacgttggaccttggtaaaagatttaacatcatttttgatgttgcttctgcattgcattatcttcatcaagaatgtgagcaattagtc |
10604952 |
T |
|
| Q |
220 |
attcattgtgatctaaaggcaagtaatgt |
248 |
Q |
| |
|
|||||||||||||||||| |||| ||||| |
|
|
| T |
10604953 |
attcattgtgatctaaagccaagcaatgt |
10604981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 10717148 - 10716914
Alignment:
| Q |
20 |
ctagtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattc |
119 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| | |
|
|
| T |
10717148 |
ctagtacagattacaaaggtcaaacttttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatcttgagattttaaatgc |
10717049 |
T |
|
| Q |
120 |
agagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgatt |
219 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||| || ||||||||||| ||||| || |
|
|
| T |
10717048 |
agatcatccaagaacattggaccttggtcatagattaaacatcatgatcgatgtcgccactgcattacattatcttcaccaagaatgtgaacaattaatc |
10716949 |
T |
|
| Q |
220 |
attcattgtgatctaaaggcaagtaatgttcttct |
254 |
Q |
| |
|
|||||||||||||| ||| |||| ||||| ||||| |
|
|
| T |
10716948 |
attcattgtgatcttaagccaagcaatgtccttct |
10716914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 10740907 - 10740673
Alignment:
| Q |
20 |
ctagtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattc |
119 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| | |
|
|
| T |
10740907 |
ctagtacagattacaaaggtcaaacttttaaagctcttgtttttgattacatgaaaaatggaagcttagaacaatggttgcatcttgagattttaaatgc |
10740808 |
T |
|
| Q |
120 |
agagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgatt |
219 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||| ||||||||||| | |||||| || |||||||||||||||| || ||||||||||| |||||| | |
|
|
| T |
10740807 |
agatcatccaagaacattggaccttggtcatagattaaacatcatgaacgatgtcgccactgcattacattatcttcaccaagaatgtgaacaattggtc |
10740708 |
T |
|
| Q |
220 |
attcattgtgatctaaaggcaagtaatgttcttct |
254 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
10740707 |
cttcattgtgatctaaagccaagcaatgtccttct |
10740673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 10565030 - 10565250
Alignment:
| Q |
22 |
agtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattcag |
121 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| |
|
|
| T |
10565030 |
agtacagattacaaaggtcaagaatttaaagctctggtttttgagtacatgaaaaatggaagcttagatcaatggttgcatcctgagattttaaatgcag |
10565129 |
T |
|
| Q |
122 |
agcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattat |
221 |
Q |
| |
|
| | |||| |||||||||| ||| |||||| ||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||| | || |
|
|
| T |
10565130 |
aacccccaacaacattggactttgctcatagattatacattattatcgatgttgcttctgcattacattatcttcatagagaatgtgaagaattggtcat |
10565229 |
T |
|
| Q |
222 |
tcattgtgatctaaaggcaag |
242 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
10565230 |
tcattgtgatctaaagccaag |
10565250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 10611711 - 10611939
Alignment:
| Q |
20 |
ctagtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattc |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
10611711 |
ctagtacagattacaaaggtcaagaatttaaagccctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatcccaaggttttaaatga |
10611810 |
T |
|
| Q |
120 |
agagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgatt |
219 |
Q |
| |
|
||||||| || |||||||||||| ||||||| |||||||||||||| ||||||| |||||||||||||||||| ||| | ||||||||||||||| | |
|
|
| T |
10611811 |
agagcatacagcaacattggacctcagtcatagattaaacatcattatggatgttggttctgcattacattatcttcataatgaatgtgagcaattggtc |
10611910 |
T |
|
| Q |
220 |
attcattgtgatctaaaggcaagtaatgt |
248 |
Q |
| |
|
||||||||||| ||||| |||| ||||| |
|
|
| T |
10611911 |
cttcattgtgatataaagccaagcaatgt |
10611939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 10581005 - 10581226
Alignment:
| Q |
20 |
ctagtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattc |
119 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| || | | |
|
|
| T |
10581005 |
ctagtacaaattacaaaggccaagaatttaaagctttagttttttattacatgaaaaatggaagcttagaacaatggttgcatcctcagattt-aagtgc |
10581103 |
T |
|
| Q |
120 |
agagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgatt |
219 |
Q |
| |
|
||| | || || ||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| | |
|
|
| T |
10581104 |
agaacctctaacaacattgaaccttggtcatagattaaacatcattatggatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtc |
10581203 |
T |
|
| Q |
220 |
attcattgtgatctaaaggcaag |
242 |
Q |
| |
|
||| ||||||||||||| |||| |
|
|
| T |
10581204 |
cttcgttgtgatctaaagccaag |
10581226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 10747223 - 10746989
Alignment:
| Q |
20 |
ctagtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattc |
119 |
Q |
| |
|
|||||| ||||||||||| | | || |||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
10747223 |
ctagtatagattacaaagttcaggagtttaaagctctagttttttattacataaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatga |
10747124 |
T |
|
| Q |
120 |
agagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgatt |
219 |
Q |
| |
|
||||||||||||||| || |||||||| || || |||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| | |
|
|
| T |
10747123 |
agagcatccaaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtc |
10747024 |
T |
|
| Q |
220 |
attcattgtgatctaaaggcaagtaatgttcttct |
254 |
Q |
| |
|
||||| |||||||| ||| |||| ||||| ||||| |
|
|
| T |
10747023 |
attcactgtgatctcaagccaagcaatgtccttct |
10746989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 10763341 - 10763107
Alignment:
| Q |
20 |
ctagtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattc |
119 |
Q |
| |
|
||||||| ||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||| | || ||| || ||||||| | |
|
|
| T |
10763341 |
ctagtactgattataaaggtcaagaatttaaagctctggtttttgattacatgaaaaatggaagcttagaacgatggctgcaccctaggaatttaaatgc |
10763242 |
T |
|
| Q |
120 |
agagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgatt |
219 |
Q |
| |
|
|||| ||||| ||||||||| |||| ||| || | || |||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| | |
|
|
| T |
10763241 |
agagactccaacaacattggatcttgatcaaagactgaatatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtc |
10763142 |
T |
|
| Q |
220 |
attcattgtgatctaaaggcaagtaatgttcttct |
254 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
10763141 |
cttcattgtgatctaaagccaagcaatgtccttct |
10763107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 242
Target Start/End: Complemental strand, 10588635 - 10588416
Alignment:
| Q |
23 |
gtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattcaga |
122 |
Q |
| |
|
|||| ||||| |||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| | ||||| || | | |||||||| |
|
|
| T |
10588635 |
gtactgattataaaggtcaagaatttaaagctttagtttttgattacatgaaaaatggaagtttagaacaatggcttcatccatggaatgtgaattcaga |
10588536 |
T |
|
| Q |
123 |
gcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattatt |
222 |
Q |
| |
|
|||||||| ||| |||||||||| |||||| ||||| |||| ||||||| ||||||||||| |||||||||| ||||| ||||||||||| || | || |
|
|
| T |
10588535 |
gcatccaagaacgttggaccttgttcatagattaaatatcactatcgatattgcttctgcactacattatcttcatcatgaatgtgagcaggtggtcctt |
10588436 |
T |
|
| Q |
223 |
cattgtgatctaaaggcaag |
242 |
Q |
| |
|
||||||||| ||||| |||| |
|
|
| T |
10588435 |
cattgtgatataaagccaag |
10588416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 248
Target Start/End: Original strand, 10558911 - 10559131
Alignment:
| Q |
28 |
gattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattcagagcatc |
127 |
Q |
| |
|
|||||||||||| | ||||| ||||||||||||||||| |||||||||||||||||||||||| | ||||| ||| | ||| | ||| |||||| | |
|
|
| T |
10558911 |
gattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagcttagaaaactggttgcattcaaggatgatgaatgtagagcaac |
10559010 |
T |
|
| Q |
128 |
caaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattg |
227 |
Q |
| |
|
||| | ||||||| ||| ||| || | || |||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| | ||||||| |
|
|
| T |
10559011 |
caagagcattggatcttaatcaaagactgaatatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtccttcattg |
10559110 |
T |
|
| Q |
228 |
tgatctaaaggcaagtaatgt |
248 |
Q |
| |
|
|||||||||| |||| ||||| |
|
|
| T |
10559111 |
tgatctaaagccaagcaatgt |
10559131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 32 - 248
Target Start/End: Complemental strand, 19606061 - 19605845
Alignment:
| Q |
32 |
acaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattcagagcatccaaa |
131 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||| | || | ||| |||| ||||||| |
|
|
| T |
19606061 |
acaaaggtctagaattcaaagctctagtttttgagtacatgagaaatggaagcttagaacaatggttgcatcccgggacaatgaatgcagatcatccaag |
19605962 |
T |
|
| Q |
132 |
aacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgat |
231 |
Q |
| |
|
||||||| | ||| || || ||||| ||| || |||||||| |||||||||||||||| || ||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
19605961 |
aacattgaagtttgagcaaagattaaatatccttgtcgatgtttcttctgcattacattaccttcatcatgaatgtgagcaattggtccttcattgtgat |
19605862 |
T |
|
| Q |
232 |
ctaaaggcaagtaatgt |
248 |
Q |
| |
|
|||||| |||| ||||| |
|
|
| T |
19605861 |
ctaaagccaagcaatgt |
19605845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 7193008 - 7193240
Alignment:
| Q |
22 |
agtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagat-tttaaattca |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||| ||||| |||||||| || |||||||||||||||||| |||||||| |||| | ||| | |
|
|
| T |
7193008 |
agtacagattacaaaggtcaagaatttaaagctttagtctttgaatacatgaacaacggaagcttagaacaatggctacatcct-agatcagtgaatgta |
7193106 |
T |
|
| Q |
121 |
gagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgatta |
220 |
Q |
| |
|
||| ||| || ||| |||||||||| ||| || || || ||| | | ||| |||| | || ||||||||| || |||| ||||||||||||| ||| | |
|
|
| T |
7193107 |
gagaatcaaagaacgttggaccttgatcaaagattgaatatcgctgttgatattgcctttgtattacattaccttcatcttgaatgtgagcaatcgatca |
7193206 |
T |
|
| Q |
221 |
ttcattgtgatctaaaggcaagtaatgttcttct |
254 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
7193207 |
ttcattgtgatctaaagccaagcaatgtccttct |
7193240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 9836528 - 9836325
Alignment:
| Q |
28 |
gattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattcagagcatc |
127 |
Q |
| |
|
||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| || | |||||||| ||| |
|
|
| T |
9836528 |
gattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggacagtggattcagagtatc |
9836429 |
T |
|
| Q |
128 |
caaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattg |
227 |
Q |
| |
|
| | ||||||| |||||| ||| || |||| ||| || ||| |||||||||||||||||||||| ||| |||||||||||| || | |||||||| |
|
|
| T |
9836428 |
ctagaacattgaaccttgttcaaagactaaatatctccattgatattgcttctgcattacattatcttcattgtgaatgtgagcaagtggtcattcattg |
9836329 |
T |
|
| Q |
228 |
tgat |
231 |
Q |
| |
|
|||| |
|
|
| T |
9836328 |
tgat |
9836325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 10660291 - 10660209
Alignment:
| Q |
22 |
agtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcc |
104 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||| |||| ||||| |||||||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
10660291 |
agtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatggctacatcc |
10660209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 179
Target Start/End: Original strand, 9825109 - 9825261
Alignment:
| Q |
28 |
gattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaat-ggaagcttagaacaatggttacatcctgagattttaaattcagagcat |
126 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||| |||||| ||||| |||||||||||||||||||| |||| ||| ||| ||||||| |
|
|
| T |
9825109 |
gattacaaagggcaagaattcaaagctctagtttttgagtacatgcaaaatgggaagcttagaacaatggttgaatccaaggatagagaatgtagagcat |
9825208 |
T |
|
| Q |
127 |
ccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttc |
179 |
Q |
| |
|
|| | ||||||||| |||| ||| || || || |||||||| ||||||||||| |
|
|
| T |
9825209 |
cctagaacattggatcttgatcaaagattgaatatcattattgatgttgcttc |
9825261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 10652408 - 10652176
Alignment:
| Q |
22 |
agtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattcag |
121 |
Q |
| |
|
||||| |||||||||||| |||| ||||| ||| |||| ||||| |||||||| || |||| | ||||||||||| ||||||| | || | ||| ||| |
|
|
| T |
10652408 |
agtaccgattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaacggaaacctagaacaatggctacatccaggtataatgaatgcag |
10652309 |
T |
|
| Q |
122 |
agcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattat |
221 |
Q |
| |
|
| || || || |||||||||| ||| | | || |||||| | || ||||||||| ||||||||| || ||||| |||||||||||| | | || |
|
|
| T |
10652308 |
ggattcaaagaatgttggaccttgatcaacgactgaatatcattgttgacattgcttctgtattacattaccttcatcatgaatgtgagcaagcggtcat |
10652209 |
T |
|
| Q |
222 |
tcattgtgatctaaaggcaagtaatgttcttct |
254 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| |
|
|
| T |
10652208 |
tcattgtgatctaaagccaagtaatgtccttct |
10652176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 9850879 - 9850832
Alignment:
| Q |
49 |
aaagctctagtttttgattacatgaaaaatggaagcttagaacaatgg |
96 |
Q |
| |
|
||||||||||||||| | ||||||| |||||||||||||||||||||| |
|
|
| T |
9850879 |
aaagctctagttttttagtacatgataaatggaagcttagaacaatgg |
9850832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 10660130 - 10660059
Alignment:
| Q |
183 |
attacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaaggcaagtaatgttcttct |
254 |
Q |
| |
|
||||||||| || ||||| |||||||||||| | | |||||||||||||||||| |||||||||| ||||| |
|
|
| T |
10660130 |
attacattaccttcatcacgaatgtgagcaagcggtcattcattgtgatctaaagccaagtaatgtccttct |
10660059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 7294 - 7528
Alignment:
| Q |
20 |
ctagtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattc |
119 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||| | |
|
|
| T |
7294 |
ctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcctgagactttgaatgc |
7393 |
T |
|
| Q |
120 |
agagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgatt |
219 |
Q |
| |
|
| | | ||||| ||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| || |||| ||||||||||||||| || |
|
|
| T |
7394 |
aaatcctccaataacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattacattaacttcatcgagaatgtgagcaattaata |
7493 |
T |
|
| Q |
220 |
attcattgtgatctaaaggcaagtaatgttcttct |
254 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
7494 |
cttcattgtgatctaaagccaagcaatgtccttct |
7528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 12899571 - 12899805
Alignment:
| Q |
20 |
ctagtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattc |
119 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| ||| | |
|
|
| T |
12899571 |
ctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacaatggttacatcccgagactttgaatgc |
12899670 |
T |
|
| Q |
120 |
agagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgatt |
219 |
Q |
| |
|
| | | ||||| ||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||| | |
|
|
| T |
12899671 |
aaatcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattagtc |
12899770 |
T |
|
| Q |
220 |
attcattgtgatctaaaggcaagtaatgttcttct |
254 |
Q |
| |
|
||||||||||| ||||| |||| ||||| ||||| |
|
|
| T |
12899771 |
tttcattgtgatataaagccaagcaatgtccttct |
12899805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 12907191 - 12907425
Alignment:
| Q |
20 |
ctagtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattc |
119 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | ||| ||| | |
|
|
| T |
12907191 |
ctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcctgaaactttgaatgc |
12907290 |
T |
|
| Q |
120 |
agagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgatt |
219 |
Q |
| |
|
| | | ||||| ||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| || || |
|
|
| T |
12907291 |
aaatcctccaacaacattgaaccttggtcttagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagcagttaatc |
12907390 |
T |
|
| Q |
220 |
attcattgtgatctaaaggcaagtaatgttcttct |
254 |
Q |
| |
|
| |||||||||||||| |||| ||||| ||||| |
|
|
| T |
12907391 |
ctccattgtgatctaaaaccaagcaatgtccttct |
12907425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 12932280 - 12932514
Alignment:
| Q |
20 |
ctagtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattc |
119 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||| | |
|
|
| T |
12932280 |
ctagcacaaattacaaaggtcaagaatttaaagcactagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcctgagactttgaatgc |
12932379 |
T |
|
| Q |
120 |
agagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgatt |
219 |
Q |
| |
|
| | | ||||| ||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||||| || |||| |||||||||||| || || |
|
|
| T |
12932380 |
aaatcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattgcattaccttcatcgagaatgtgagcagttaatc |
12932479 |
T |
|
| Q |
220 |
attcattgtgatctaaaggcaagtaatgttcttct |
254 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||||| |
|
|
| T |
12932480 |
cttcattgtgatctaaaaccaagcaatgtccttct |
12932514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 12958079 - 12958313
Alignment:
| Q |
20 |
ctagtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattc |
119 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| | ||||| ||| | |
|
|
| T |
12958079 |
ctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatggaaaatggaagcttagaacagtggttacatcctcaaattttgaatgc |
12958178 |
T |
|
| Q |
120 |
agag-catccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgat |
218 |
Q |
| |
|
||| | ||||| ||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| || || |
|
|
| T |
12958179 |
-gagtcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagcagttaat |
12958277 |
T |
|
| Q |
219 |
tattcattgtgatctaaaggcaagtaatgttcttct |
254 |
Q |
| |
|
|||| |||||||||||| |||| ||||| ||||| |
|
|
| T |
12958278 |
ccttcactgtgatctaaagccaagcaatgtccttct |
12958313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 32 - 254
Target Start/End: Original strand, 12948657 - 12948879
Alignment:
| Q |
32 |
acaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattcagagcatccaaa |
131 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||| || | | ||||| |
|
|
| T |
12948657 |
acaaaggccaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcctgagactttgaatgcaaatcctccaac |
12948756 |
T |
|
| Q |
132 |
aacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgat |
231 |
Q |
| |
|
||||||| ||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| | ||||||||||| |
|
|
| T |
12948757 |
aacattgaaccttcgtcgtagattaaacatcattatcgatgttgcttctgcattacattatcttcatcgataatgtgagcaattagtccttcattgtgat |
12948856 |
T |
|
| Q |
232 |
ctaaaggcaagtaatgttcttct |
254 |
Q |
| |
|
||||| |||| ||||| ||||| |
|
|
| T |
12948857 |
ctaaaaccaagcaatgtccttct |
12948879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 17923611 - 17923377
Alignment:
| Q |
20 |
ctagtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattc |
119 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||| | |
|
|
| T |
17923611 |
ctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcctgagactttgaatgc |
17923512 |
T |
|
| Q |
120 |
agagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgatt |
219 |
Q |
| |
|
| | | ||||| ||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||||| || |||| |||||||||||| || || |
|
|
| T |
17923511 |
aaatcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattgcattaccttcatcgagaatgtgagcagttaatc |
17923412 |
T |
|
| Q |
220 |
attcattgtgatctaaaggcaagtaatgttcttct |
254 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||||| |
|
|
| T |
17923411 |
cttcattgtgatctaaaaccaagcaatgtccttct |
17923377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 31467368 - 31467300
Alignment:
| Q |
22 |
agtacagattacaaaggtgaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaa |
90 |
Q |
| |
|
|||||||||| ||||| | |||||||||||||||| ||||| || ||||||||||| |||||||||||| |
|
|
| T |
31467368 |
agtacagatttcaaagatcaagaatttaaagctcttgttttcgagtacatgaaaaacggaagcttagaa |
31467300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 39898877 - 39898820
Alignment:
| Q |
46 |
tttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttacatc |
103 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
39898877 |
tttaaagcaatagtttttgaatacatgacaaatggaagcttagaggaatggttgcatc |
39898820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University