View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3634_high_3 (Length: 596)
Name: NF3634_high_3
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3634_high_3 |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 584
Target Start/End: Complemental strand, 2272161 - 2271620
Alignment:
| Q |
18 |
gccaccaacatgagcctgcagagtatctatttcttcagtgttctttgttaggttccttatggagcggcatttttgtgtggatcgattttcctacagtttc |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2272161 |
gccaccaacatgagtctgcagagtatctatttcttcagtgttctttgttaggttccttatggagcggcattttcttgtggatcgattttcctacagtttc |
2272062 |
T |
|
| Q |
118 |
tcctgagaatttaacagaccatttagctgagtttgggagtttagctagtttatcgaaatcaaagaaatctctccttacaatgatttggtgcgctactacg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272061 |
tcctgagaatttaacagaccatttagctcagtttgggagtttagttgatttatcgaaatcaaagaaatctctccttacaatgatttggtgcgctactacg |
2271962 |
T |
|
| Q |
218 |
tggatcatctcgaaggaaaggaacaacataatttttcaaagcagagcctcctccgcctctaagcttctcgataatgttaaatttctttctttttagtggt |
317 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2271961 |
tggatcatctcgaagaaaaggaacaacataatttttcaaaagagagaatcctccgcctctaagcttctcgataatgttaaatttctttctttttagtggt |
2271862 |
T |
|
| Q |
318 |
taaagacaaattccaaaattattgcttttgattaccataggggatggcttagccctttgttatatatgggcataggttcatagtctcttatctttgattt |
417 |
Q |
| |
|
||||||||||||| ||| || |||| ||||||||||||||||||||||||||||||| ||||||||| |||| ||| |
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|
| T |
2271861 |
taaagacaaattc----------------------catgggtgatgacttagccctttgttatatatgggcataggttg---gtctcttatatttggttt |
2271787 |
T |
|
| Q |
418 |
atgctcttttgtaactgatgatgtgactttttgagtctcatttccgacacaccttatgctaggaatagtgcagtttagctttaatttattctattttgac |
517 |
Q |
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|
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2271786 |
atgctcttttgtaaccgatgatgtgactttttgagcctcatttccgacacaccttatgctaggaatagtgcagtttagttttaatttattctattttgac |
2271687 |
T |
|
| Q |
518 |
ttcttnnnnnnnnttacctttttgttttcactttataattcaaaatatcaagagtcgcatccatatt |
584 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2271686 |
ttcttaaaaaaaattacctttttgttttcactttataattcaaaatatcaagagtcgcatccatatt |
2271620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 390
Target Start/End: Original strand, 32900416 - 32900528
Alignment:
| Q |
278 |
aagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggcttagccctttgt |
377 |
Q |
| |
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|||||||| ||||||| ||| ||||||| || | ||||| ||| | || || |||| |||||||||||||||||||||| | |||||||||||||| | |
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| T |
32900416 |
aagcttcttgataatggtaagcttctttcattctggtggtaaaaagctaactcaaaaaatattgcttttgattaccataggtggtggcttagccctttat |
32900515 |
T |
|
| Q |
378 |
tatatatgggcat |
390 |
Q |
| |
|
|| ||||||||| |
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|
| T |
32900516 |
catgtatgggcat |
32900528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 60 - 406
Target Start/End: Complemental strand, 22530 - 22179
Alignment:
| Q |
60 |
ctttgttaggttccttatggagcggcatttttgtgtggatcgattttcctacagtttctcctgagaatttaacagaccatttagctgagtttgggagttt |
159 |
Q |
| |
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||||||| | || ||||||||||| |||| |||||||| | ||| |||||||||||| |||||| |||| | ||||||||| ||||||||||||| |
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| T |
22530 |
ctttgttcgatttcttatggagcgatgttttggtgtggattggatttattacagtttctcccgagaatgcaacaaatcatttagctcagtttgggagttt |
22431 |
T |
|
| Q |
160 |
agctagtttatcgaaatcaaagaaatctctccttacaatgatttggtgcgctactacgtggatcatctcgaaggaaaggaacaacataatttttcaaagc |
259 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| ||| ||||| ||||||||||| | |||| ||| | |||||||||||| |||||||||||||||| | |
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| T |
22430 |
agctagtatatcgaaatcaaagagatctctcctcacattgattcggtgcgctactgcatggaccatttggaaggaaaggaataacataatttttcaaaac |
22331 |
T |
|
| Q |
260 |
agagcctcctccgcctctaagct-----tctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattacca |
354 |
Q |
| |
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| || |||||| | ||| | | | | | ||||||||||| |||||||||||| |||| |||| ||||||||||||| || ||||||||||||| |
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| T |
22330 |
aaaggctcctctgtctcaatgttttttctttttataatgttaaacttctttctttttggtggctaaatgcaaattccaaaatcatgacttttgattacca |
22231 |
T |
|
| Q |
355 |
taggggatggcttagccctttgttatatatgggcataggttcatagtctctt |
406 |
Q |
| |
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| || ||||||||||||||||| | ||| || ||||||| |||||||||| |
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| T |
22230 |
aatagggtggcttagccctttgttgtgtataggaataggttgatagtctctt |
22179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 198 - 376
Target Start/End: Complemental strand, 41238578 - 41238400
Alignment:
| Q |
198 |
tgatttggtgcgctactacgtggatcatctcgaaggaaaggaacaacataatttttcaaagcagagcctcctccgcctctaagcttctcgataatgttaa |
297 |
Q |
| |
|
|||||||||| ||| |||||||| || | |||||||| |||||||||||| ||||||| || ||||||||||| ||||||||||| ||||||||||| |
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|
| T |
41238578 |
tgatttggtgtgcttgtacgtggactatttggaaggaaatgaacaacataatatttcaaaacaaagcctcctccgtttctaagcttctagataatgttaa |
41238479 |
T |
|
| Q |
298 |
atttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggcttagccctttg |
376 |
Q |
| |
|
| |||||||||||| || ||||||| |||| | ||||||||||| ||||||||| |||||| | |||| ||||||||| |
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| T |
41238478 |
acttctttctttttggtagttaaaggcaaaatacaaaattattgtttttgattatcataggtggtggccaagccctttg |
41238400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 69 - 378
Target Start/End: Complemental strand, 23787557 - 23787248
Alignment:
| Q |
69 |
gttccttatggagcggcatttttgtgtggatcgattttcctacagtttctcctgagaatttaacagaccatttagctgagtttgggagtttagctagttt |
168 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| || |||| | |||||||||| | |||||| |||| |||||| | |||||| ||||||||||||| | |
|
|
| T |
23787557 |
gttccttatggaacggtatttttgtgtggattgactttctttcagtttctccaaataatttatcagatcatttaattcagtttgagagtttagctagtat |
23787458 |
T |
|
| Q |
169 |
atcgaaatcaaagaaatctctccttacaatgatttggtgcgctactacgtggatcatctcgaaggaaaggaacaacataatttttcaaagcagagcctcc |
268 |
Q |
| |
|
|||||||||||| ||||||| | ||| ||||||| || ||| |||||||| || | |||| ||| ||| | | ||| ||||||| || || |||| |
|
|
| T |
23787457 |
atcgaaatcaaaacgatctctcttcacattgatttgatgtgcttgtacgtggactatttggaagaaaatgaatagtagaatatttcaaaacaaagtctcc |
23787358 |
T |
|
| Q |
269 |
tccgcctctaagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggctta |
368 |
Q |
| |
|
|||| || |||||||| |||||| | || |||||||||||| ||||||||| |||| || ||||||| || ||||||||| ||||| |||||| || |
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|
| T |
23787357 |
cccgcttcaaagcttctagataatataaagcttctttctttttgatggttaaaggcaaaatctaaaattactgtttttgattattataggtgatggccta |
23787258 |
T |
|
| Q |
369 |
gccctttgtt |
378 |
Q |
| |
|
| ||||||| |
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|
| T |
23787257 |
actctttgtt |
23787248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 278 - 392
Target Start/End: Original strand, 12163090 - 12163204
Alignment:
| Q |
278 |
aagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggcttagccctttgt |
377 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| | |||||||| | ||||| |
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|
| T |
12163090 |
aagcttattgataatgttaagcttctttctttttggtggttaaagacaaatttcaaaattattgcttttgattactgtaggtggtggcttagtcttttgt |
12163189 |
T |
|
| Q |
378 |
tatatatgggcatag |
392 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
12163190 |
tatgtatgggcatag |
12163204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 208
Target Start/End: Original strand, 12162860 - 12163034
Alignment:
| Q |
33 |
ctgcagagtatctatttcttcagtgttctttgttaggttccttatggagcggcatttttgtgtggatcgattttcctacagtttctcctgagaatttaac |
132 |
Q |
| |
|
|||||||| |||| ||||| |||||| |||||| |||||||||||||||| |||| ||||||||| |||| |||| | ||| | |||||| |||| |
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|
| T |
12162860 |
ctgcagagcatctttttctacagtgtcttttgtttggttccttatggagcgatgttttggtgtggatcagatttcttacaatatcttcggagaatgtaac |
12162959 |
T |
|
| Q |
133 |
agaccatttagctgagtttgggagtttagctagtttatcgaaatcaaagaaatctctccttacaatgatttggtgc |
208 |
Q |
| |
|
||| ||| || || | |||| |||||||||| || || | ||||| |||| ||||||||| ||| |||||| |||| |
|
|
| T |
12162960 |
agatcatctaactcaatttgagagtttagctggtata-caaaatctaagagatctctcctcacattgatttagtgc |
12163034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 368
Target Start/End: Original strand, 40613957 - 40614036
Alignment:
| Q |
289 |
taatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggctta |
368 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||| |||| | |||||||||| | ||||||| |||||| | ||||||| |
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|
| T |
40613957 |
taatgttaagtgtctttctttttggtggttaaaggcaaaatttaaaattattgttcttgattatcataggtggtggctta |
40614036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 368
Target Start/End: Complemental strand, 30545865 - 30545748
Alignment:
| Q |
251 |
tttcaaagcagagcctcctccgcctctaagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgatt |
350 |
Q |
| |
|
||||||| || |||||||||| ||| |||| ||| ||||||||||| || ||||||||| |||||||||| ||| || |||||||||| |||||||| |
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|
| T |
30545865 |
tttcaaaacaaagcctcctccatctccaagcgtctagataatgttaatcttatttctttttggtggttaaagctaaaatctaaaattattgtttttgatt |
30545766 |
T |
|
| Q |
351 |
accataggggatggctta |
368 |
Q |
| |
|
| |||||| | ||||||| |
|
|
| T |
30545765 |
atcataggtggtggctta |
30545748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 9589754 - 9589706
Alignment:
| Q |
332 |
aaaattattgcttttgattaccataggggatggcttagccctttgttat |
380 |
Q |
| |
|
||||||||| ||||||||||||||||| | || |||||||||||||||| |
|
|
| T |
9589754 |
aaaattattccttttgattaccataggtggtgtcttagccctttgttat |
9589706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 395
Target Start/End: Complemental strand, 27889138 - 27889087
Alignment:
| Q |
344 |
tttgattaccataggggatggcttagccctttgttatatatgggcataggtt |
395 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| || | |||||||||||||| |
|
|
| T |
27889138 |
tttgattaccataggtgatgacttagccctttattgtgtatgggcataggtt |
27889087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 373
Target Start/End: Original strand, 10721711 - 10721807
Alignment:
| Q |
277 |
taagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggcttagccct |
373 |
Q |
| |
|
||||||| | ||||||||||| || |||||||| | ||||||||||||||| | || || |||||| ||| || |||||| | |||||||||||| |
|
|
| T |
10721711 |
taagcttttagataatgttaagttcctttctttctggtggttaaagacaaaattcacaaaccttgcttctgactatcataggtggtggcttagccct |
10721807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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