View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3634_high_31 (Length: 238)
Name: NF3634_high_31
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3634_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36903350 - 36903572
Alignment:
| Q |
1 |
tacttttttctgcttagccacaaatttaagttgattttgttctcaatttctgcagcagcttgtttgcctgtggttttctatggtgctgcgcaaattcctc |
100 |
Q |
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| T |
36903350 |
tacttttttctgcttagccacaaatttaagttgattttgttctcaatttctgcagcagcttgtttgcctgtggttttctatggtgctgcgcaaattcctc |
36903449 |
T |
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| Q |
101 |
tgtaccattatcttctaacagctattttcactaagataccaagggcaattgatgacgttgacattttttaagaacctctatatcactatttggaataatc |
200 |
Q |
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| T |
36903450 |
tgtaccattatcttctaacagctattttcactaagataccaagggcaattgatgacgttgacattttttaagaacctctatatcactatttggaataatc |
36903549 |
T |
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| Q |
201 |
aatgtggtgttggatatattcat |
223 |
Q |
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| T |
36903550 |
aatgtggtgttggatatattcat |
36903572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 36883548 - 36883697
Alignment:
| Q |
4 |
ttttttctgcttagccacaaatttaagttgattttgttctcaatttctgcagcagcttgtttgcctgtggttttctatggtgctgcgcaaattcctctgt |
103 |
Q |
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| T |
36883548 |
ttttttctgcttagccataattttaagtcgattttgttcccaatttatgcagcaacttgtttgcctgtgactttctatgccgttgcacaatttcctcttt |
36883647 |
T |
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| Q |
104 |
accattatcttctaacagctattttcactaagataccaagggcaattgat |
153 |
Q |
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| T |
36883648 |
actttgatcttataacgtctattttaactaaggttccaacggcaactgat |
36883697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 36893551 - 36893629
Alignment:
| Q |
4 |
ttttttctgcttagccacaaatttaagttgattttgttctcaatttctgcagcagcttgtttgcctgtggttttctatg |
82 |
Q |
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| T |
36893551 |
ttttttctgcttagccataattttaagtcggttttgttcccaatttacgcagcaacttgtttgcctgtgactttctatg |
36893629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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