View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3634_high_37 (Length: 225)
Name: NF3634_high_37
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3634_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 16250215 - 16250032
Alignment:
| Q |
23 |
gctccaaacagataaacaataagcaccatatctgcccnnnnnnnnncaacatggcacaacagaccactaaacaccaaaaccgttgcatcctgaagcagga |
122 |
Q |
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| T |
16250215 |
gctccaaacagataaacaataagcaccatatctgcccaaaaaaaaacaacatggcacaacagaccactaaacaccaaaaccgttgcatcctgaagcagga |
16250116 |
T |
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| Q |
123 |
aaaatagcaacacaaattcagattaagtgattgattactactgtggtgataaaagaaaaatagctgcaaaatcaccccagtccc |
206 |
Q |
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| T |
16250115 |
aaaatagcaacacaaattcagattaagtgattgactactactgtggtgataaaagaaaaatagctgcaaaatcaccccagtccc |
16250032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 70 - 206
Target Start/End: Original strand, 16416559 - 16416695
Alignment:
| Q |
70 |
aacatggcacaacagaccactaaacaccaaaaccgttgcatcctgaagcaggaaaaatagcaacacaaattcagattaagtgattgattactactgtggt |
169 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16416559 |
aacatggcacaacagaccactaaacaccaaaaccgttgcatcctgaagcaggaaaaatagcaacacaaattcagattaagtgattgactactactgtggt |
16416658 |
T |
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| Q |
170 |
gataaaagaaaaatagctgcaaaatcaccccagtccc |
206 |
Q |
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| T |
16416659 |
gataaaagaaaaatagctgcaaaatcaccccagtccc |
16416695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 70 - 202
Target Start/End: Original strand, 42492722 - 42492854
Alignment:
| Q |
70 |
aacatggcacaacagaccactaaacaccaaaaccgttgcatcctgaagcaggaaaaatagcaacacaaattcagattaagtgattgattactactgtggt |
169 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
42492722 |
aacatggcacaacaaaccactaaacaccaaaaccgtggcatcctgaagcaggaaaaatagcaacacaaattcagattaagagattgactactactgtggt |
42492821 |
T |
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| Q |
170 |
gataaaagaaaaatagctgcaaaatcaccccag |
202 |
Q |
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| T |
42492822 |
gataaaacaaaaatagccgcaaaatcaccccag |
42492854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 24450001 - 24449931
Alignment:
| Q |
79 |
caacagaccactaaacaccaaaaccgttgcatcctgaagcaggaaaaatagcaacacaaattcagattaag |
149 |
Q |
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||||| |||| || |||||||| || | ||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
24450001 |
caacataccaatatacaccaaatccatcgcagcctgaagcaggaaaaatagcagcacaaattcagattaag |
24449931 |
T |
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