View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3634_high_8 (Length: 452)
Name: NF3634_high_8
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3634_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 224 - 381
Target Start/End: Original strand, 7667097 - 7667254
Alignment:
| Q |
224 |
tactagccaaccgaatcaacatacaaaagcatcttcttcaggcacaaaggataagaagcatcatggtgtaagagaaactgtagagagaaagataatgttt |
323 |
Q |
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| T |
7667097 |
tactagccaaccgaatcaacatgcaaaagcatcttcttcaggtacaaaggataagaagcatcatggtgtaagagaaactgtagagagaaagataatgttt |
7667196 |
T |
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| Q |
324 |
tccacatcaaactctagcggtaaagacatatcacacgaaagaattgtcccatcaagcg |
381 |
Q |
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| T |
7667197 |
tccacatcaaactctagcggtaaagacatatcacacgaaagaattgtcccatcaagcg |
7667254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 224 - 376
Target Start/End: Original strand, 7087326 - 7087478
Alignment:
| Q |
224 |
tactagccaaccgaatcaacatacaaaagcatcttcttcaggcacaaaggataagaagcatcatggtgtaagagaaactgtagagagaaagataatgttt |
323 |
Q |
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| T |
7087326 |
tactagccaaccgaatcaacataccaaagcatcttcttcaggcacaaaggataagaagcatcatggtgtaagagaaactgtagagagaaagataatgttt |
7087425 |
T |
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| Q |
324 |
tccacatcaaactctagcggtaaagacatatcacacgaaagaattgtcccatc |
376 |
Q |
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| T |
7087426 |
tccacatcaaactctagtggtaaagacatatcacacgaaagaattgtcccatc |
7087478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 7666885 - 7667030
Alignment:
| Q |
14 |
agatgaagtctccgtcgaaaatcatccccgtgtcacaaccagagaatctttctaagcacaca--gacaaaattagatgaggaaatatcaatctaaaaaat |
111 |
Q |
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| T |
7666885 |
agatgaagtctccgtcgaaaatcatccccgtgtcacaaccagagaatctttctaagcacacaaagacaaaattagatgaggaaatatcaatctaaaaaat |
7666984 |
T |
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| Q |
112 |
aacatcaaagtcccctttggaaactcaaaggaagttaccttcaacc |
157 |
Q |
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| T |
7666985 |
aacatcaaagtcccctttggaaactcaaaggaagttaccttcaacc |
7667030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 7087119 - 7087259
Alignment:
| Q |
18 |
gaagtctccgtcgaaaatcatccccgtgtcacaaccagagaatctttctaagcacac--agacaaaattagatgaggaaatatcaatctaaaaaataaca |
115 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||| | |||| ||||| |
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| T |
7087119 |
gaagtcaccatcgaaaatcatccccgtgtcacaaccagagaatctttctaagcacacaaaaacaaaactagatgaggaaatatcaacatcaaaactaaca |
7087218 |
T |
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| Q |
116 |
tcaaagtcccctttggaaactcaaaggaagttaccttcaacc |
157 |
Q |
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| T |
7087219 |
ccaaagtcccatttggaaactcaaaggaagtt-ccttcaacc |
7087259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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