View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3634_high_9 (Length: 450)
Name: NF3634_high_9
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3634_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 442
Target Start/End: Original strand, 20399325 - 20399743
Alignment:
| Q |
19 |
aggacgatgatgatgaatgggatttttcagcattcgagggtaactctgcgggaaaaagcaacggtgctgccgccaaaacaactactgaggtgaagataaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20399325 |
aggacgatgatgatgaatgggatttttcagcattcgagggtaactctgcgggaaaaagcaacggtgctgctgccaaaacaactactgaggtgaagataaa |
20399424 |
T |
|
| Q |
119 |
aatctcaaagaagcaattagaagagttgttgagcaaagtggacataagggagttgagagtggaacaagttttagcccaattgatgaaccatagtaatggc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20399425 |
aatctcaaagaagcaattagaagagttgttgagcaaagtggacataagggagttgagagtggaacaagttttggcccaattgatgaaccatagtaatggc |
20399524 |
T |
|
| Q |
219 |
tacgaatcacttcagagatcttggagacctgcacttcagagcatccctgaacttgattgaacttcattttgattagcttaagtatatgaagttgatgagg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20399525 |
tacgaatcacttcagagatcttggagacctgcacttcagagcatccctgaacttgattgaacttcattttgattagcttaagtatatgaagttgatgagg |
20399624 |
T |
|
| Q |
319 |
ctgagtattgaccaatagggtcaatcatgctttttgctcattgaaaaaataatatattgagatnnnnnnnnnngtatttgaaaaacaatattgtccatat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| |
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| T |
20399625 |
ctgagtattgaccaatagggtcaatcatgctttttgctcattgaaaaaataatatattgata---aaaaaaaagtatttgaaaaaca--attgtccatat |
20399719 |
T |
|
| Q |
419 |
gaagtggtttatgacattcatctc |
442 |
Q |
| |
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| T |
20399720 |
gaggtggtttatgacattcgtctc |
20399743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 90 - 353
Target Start/End: Original strand, 20413318 - 20413581
Alignment:
| Q |
90 |
gccaaaacaactactgaggtgaagataaaaatctcaaagaagcaattagaagagttgttgagcaaagtggacataagggagttgagagtggaacaagttt |
189 |
Q |
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|||||| |||| |||||||||||||| || || |||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
20413318 |
gccaaagcaacgactgaggtgaagatcaagattacaaagaagcagttagaagagttgttaagcaaagtggacataaaagagttgagagtggaacaagttt |
20413417 |
T |
|
| Q |
190 |
tagcccaattgatgaaccatagtaatggctacgaatcacttcagagatcttggagacctgcacttcagagcatccctgaacttgattgaacttcattttg |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| ||| | || | |
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| T |
20413418 |
tagcccaattgatgaaccatagtaatggctacgaatcacttcaaagatcttggagaccagcacttcagagcatccctgaagctgattgagcttgaattag |
20413517 |
T |
|
| Q |
290 |
attagcttaagtatatgaagttgatgaggctgagtattgaccaatagggtcaatcatgcttttt |
353 |
Q |
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| T |
20413518 |
attagtttaggtatatgaagttgatgaagataagtattggcttattgggtcaatcttgcttttt |
20413581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 72 - 279
Target Start/End: Original strand, 20390305 - 20390512
Alignment:
| Q |
72 |
aaaagcaacggtgctgccgccaaaacaactactgaggtgaagataaaaatctcaaagaagcaattagaagagttgttgagcaaagtggacataagggagt |
171 |
Q |
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|||||||| ||||| || |||||||| || || |||||||||||||| || | |||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
20390305 |
aaaagcaatggtgccgctgccaaaacgacaaccgaggtgaagataaagattacgaagaagcagttagaagagttgttgagcaaagttgacataagggagt |
20390404 |
T |
|
| Q |
172 |
tgagagtggaacaagttttagcccaattgatgaaccatagtaatggctacgaatcacttcagagatcttggagacctgcacttcagagcatccctgaact |
271 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||| | |
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| T |
20390405 |
tgagagtggagcaagttttagcccaattgatgaaccatagtaatggctaccaatcacttcaaagatcttggagacctgcacttcaaagcatccctgaagt |
20390504 |
T |
|
| Q |
272 |
tgattgaa |
279 |
Q |
| |
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|||||||| |
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| T |
20390505 |
tgattgaa |
20390512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 72 - 328
Target Start/End: Original strand, 20380391 - 20380647
Alignment:
| Q |
72 |
aaaagcaacggtgctgccgccaaaacaactactgaggtgaagataaaaatctcaaagaagcaattagaagagttgttgagcaaagtggacataagggagt |
171 |
Q |
| |
|
||||||||||||||| || |||||| || || ||||||||||| ||||| |||||||||| ||||||||| |||| |||||||||||||| ||||||| |
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| T |
20380391 |
aaaagcaacggtgctcccaccaaaatgacaaccgaggtgaagatcaaaattacaaagaagcagttagaagagctgttaagcaaagtggacatgagggagt |
20380490 |
T |
|
| Q |
172 |
tgagagtggaacaagttttagcccaattgatgaaccatagtaatggctacgaatcacttcagagatcttggagacctgcacttcagagcatccctgaact |
271 |
Q |
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|||| || || ||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| || ||||||||| | |
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| T |
20380491 |
tgagggtagagcaagttttagcccaattgatgaaccatagcaatggctatcaatcacttcaaagatcttggagacctgcacttcaaagtatccctgaagt |
20380590 |
T |
|
| Q |
272 |
tgattgaacttcattttgattagcttaagtatatgaagttgatgaggctgagtattg |
328 |
Q |
| |
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|||| | |||||||| ||||| ||| || ||||||||||| || | ||||||||| |
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|
| T |
20380591 |
ggattaagcttcatttagattaatttaggtgtatgaagttgaggaagatgagtattg |
20380647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 376
Target Start/End: Original strand, 20390509 - 20390580
Alignment:
| Q |
305 |
tgaagttgatgaggctgagtattgaccaatagggtcaatcatgctttttgctcattgaaaaaataatatatt |
376 |
Q |
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|||||||||||| | | ||||||||||| | ||||||||| |||||||||||| ||||||||| |||||||| |
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| T |
20390509 |
tgaagttgatgaagattagtattgaccagttgggtcaatcttgctttttgctctttgaaaaaaaaatatatt |
20390580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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