View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3634_low_11 (Length: 444)
Name: NF3634_low_11
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3634_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 247 - 424
Target Start/End: Original strand, 36192723 - 36192908
Alignment:
| Q |
247 |
aaataagtagtcacagtggcaagcattttc--------aaaaccaggtaggatgtaatattacatcttcaatcgcaccgcaggcttttcatttggctgct |
338 |
Q |
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| T |
36192723 |
aaataagtagtcacagtggcaagcattttcaaaatttcaaaaccaagtaggatgtaatattacattttcaatcgcaccgcaggcttttcatttggctgct |
36192822 |
T |
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| Q |
339 |
gaactaattttgcagttataactttcacaatctccatgacttcatctgaattctcagtcttcgtaacaagattgcagataatagtg |
424 |
Q |
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| T |
36192823 |
gaactaattttgcagttataactttcacaatctccatgacttcatctggattctcagtcttcgtaacaagattgcagataatagtg |
36192908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 36192467 - 36192592
Alignment:
| Q |
124 |
tgaactatgtgctataccttttgttatccttcaaaacattagagatgg--agaaacagctctctctcttctggtgtcccaattttccactctttaaagga |
221 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||| | |
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| T |
36192467 |
tgaactatgtgctataccttttgttttccttcaaaacattagagatggtgagaaacagctctctctgttccggtgtcccaattttccactctttcaagaa |
36192566 |
T |
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| Q |
222 |
gctatcgatctttttgaatgaaggta |
247 |
Q |
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| T |
36192567 |
gctatcgatctttttgaatgaaggta |
36192592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 36192332 - 36192430
Alignment:
| Q |
23 |
cagagattgaggtgtggatatatgactactgaccgaatgggtagtgagactgatg-caataaacttatgttatattcttattcctactccaaagagaag |
120 |
Q |
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| T |
36192332 |
cagagattgaggtgtggatatatgattactgaccgaatgggtagtgagactgatgacaataaacttatgttatattctaattcctactccaaagagaag |
36192430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 250 - 424
Target Start/End: Complemental strand, 5054766 - 5054584
Alignment:
| Q |
250 |
taagtagtcacagtggcaagcattttcaaaa--------ccaggtaggatgtaatattacatcttcaatcgcaccgcaggcttttcatttggctgctgaa |
341 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5054766 |
taagtagtcacagtggcaagcattttcaaaatttcaaaaccaagtaggatgtaatattacatcttcaatcgcaccgcaggcttttcatttggctgctgaa |
5054667 |
T |
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| Q |
342 |
ctaattttgcagttataactttcacaatctccatgacttcatctgaattctcagtcttcgtaacaagattgcagataatagtg |
424 |
Q |
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| T |
5054666 |
ctaattttgcagttataactttcacaatctccatgacttcatctggattctcagtcttcgtaacaagattgcagacaatagtg |
5054584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 127 - 247
Target Start/End: Complemental strand, 5055023 - 5054901
Alignment:
| Q |
127 |
actatgtgctataccttttgttatccttcaaaacattagagatgg--agaaacagctctctctcttctggtgtcccaattttccactctttaaaggagct |
224 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |
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| T |
5055023 |
actatgtgctataccttttgttttccttcaaaacattagagatggtgagaaacagctctctctgttctggtgtcccaattttccactctttcaagaagct |
5054924 |
T |
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| Q |
225 |
atcgatctttttgaatgaaggta |
247 |
Q |
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||| ||||||||||||||||||| |
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| T |
5054923 |
atcaatctttttgaatgaaggta |
5054901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 5055160 - 5055063
Alignment:
| Q |
23 |
cagagattgaggtgtggatatatgactactgaccgaatgggtagtgagactgatg-caataaacttatgttatattcttattcctactccaaagagaag |
120 |
Q |
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||||||||| ||||||||||||||||| |||||| ||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5055160 |
cagagattgtggtgtggatatatgactcctgaccaaataggtagtgagactgatgacaataa-cttatgttatattcttattcctactccaaagagaag |
5055063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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