View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3634_low_18 (Length: 316)
Name: NF3634_low_18
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3634_low_18 |
 | |
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| [»] chr4 (9 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 8e-92; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 7496836 - 7496521
Alignment:
| Q |
1 |
taatgtgttgaagcccctcaggtaaatatttcatttttgggatttttatgaattccaacactttgaggtttgctagttctttccatttcatgctgtaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||| | |||||||||||||||| ||||||||| |
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|
| T |
7496836 |
taatgtgttgaagcccctcaggtaaatatttcatttttgggatttcatagaactgcaacaatttgaggttcgtaagttctttccatttcacgctgtaaca |
7496737 |
T |
|
| Q |
101 |
accatcttcatcattgcacggatcaaactcctcgcaattgaagatgcccagttcacacaatgtacttagatgttgaaagactccacggagagatttcaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| | || |||| ||| ||||||||||||||||||||| |||| ||||||||| ||| |
|
|
| T |
7496736 |
accatcttcatcattgcacggatcaaactcctcgcaattttcgatacacaattcagacagtgtacttagatgttgaaagacaccacagagagatttaaaa |
7496637 |
T |
|
| Q |
201 |
ttgagcatggaatatnnnnnnngatactctacttttgaataattgactacttgctgtaatatcttctctgtgacatttgaaagaattacttccctgacat |
300 |
Q |
| |
|
||||| ||| || | ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
7496636 |
ttgagtatgaaacctatatcaagatactctactttggaatgattgactgcttgctgtaatatcttctctgtgacatttgaaagcattactttcctgacat |
7496537 |
T |
|
| Q |
301 |
gtttgtgttgtggaat |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7496536 |
gtttgtgttgtggaat |
7496521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 7126704 - 7127019
Alignment:
| Q |
1 |
taatgtgttgaagcccctcaggtaaatatttcatttttgggatttttatgaattccaacactttgaggtttgctagttctttccatttcatgctgtaaca |
100 |
Q |
| |
|
||||||| ||||| |||||||| |||||||||||||||||||||| ||| ||||||| || |||||| | |||||||||||||||||||||||||| |
|
|
| T |
7126704 |
taatgtgctgaagtccctcaggcaaatatttcatttttgggatttcatagaactccaacatttcgaggttggtgagttctttccatttcatgctgtaaca |
7126803 |
T |
|
| Q |
101 |
accatcttcatcattgcacggatcaaactcctcgcaattgaagatgcccagttcacacaatgtacttagatgttgaaagactccacggagagatttcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||| | || | |||||| | |||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
7126804 |
accatcttcatcattgcacggatcaaactccttgcaattgtggatacgcaatgcacacagtctacttagatgttgaaagagtccactgagagatttcaaa |
7126903 |
T |
|
| Q |
201 |
ttgagcatggaatatnnnnnnngatactctacttttgaataattgactacttgctgtaatatcttctctgtgacatttgaaagaattacttccctgacat |
300 |
Q |
| |
|
|| || ||| || | |||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
7126904 |
ttcagtatgtcatttatcttaagatactctacttttgaatgattgactgcttgttgtaatatcttctctgtgacatttgaaagaattacattcctgacat |
7127003 |
T |
|
| Q |
301 |
gtttgtgttgtggaat |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7127004 |
gtttgtgttgtggaat |
7127019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 7530562 - 7530247
Alignment:
| Q |
1 |
taatgtgttgaagcccctcaggtaaatatttcatttttgggatttttatgaattccaacactttgaggtttgctagttctttccatttcatgctgtaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | | |||| ||||| ||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
7530562 |
taatgtgttgaagcccctcaggtaaatatttcatttttgggatatctttgaaagtcaacattttgaggttcgagagttctttccatttcatgctgtaaca |
7530463 |
T |
|
| Q |
101 |
accatcttcatcattgcacggatcaaactcctcgcaattgaagatgcccagttcacacaatgtacttagatgttgaaagactccacggagagatttcaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||| ||| || |||| ||| |||||||||||||||||||||||||| ||||||||| | | |
|
|
| T |
7530462 |
accatcttcatcattgcacggatcaaattccttgcaattggtgatatacaattcatacagtgtacttagatgttgaaagactccacagagagatttaaga |
7530363 |
T |
|
| Q |
201 |
ttgagcatggaatatnnnnnnngatactctacttttgaataattgactacttgctgtaatatcttctctgtgacatttgaaagaattacttccctgacat |
300 |
Q |
| |
|
||||| ||||||| | ||||||||||||| |||| ||||||| |||||||||||||| ||||| |||| | | ||||||||||||||||| || |
|
|
| T |
7530362 |
ttgagtatggaatttatctgaagatactctactttggaatgattgactgcttgctgtaatatcgtctctctgacctctctaagaattacttccctgatat |
7530263 |
T |
|
| Q |
301 |
gtttgtgttgtggaat |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7530262 |
gtttgtgttgtggaat |
7530247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 7522494 - 7522233
Alignment:
| Q |
1 |
taatgtgttgaagcccctcaggtaaatatttcatttttgggatttttatgaattccaacactttgaggtttgctagttctttccatttcatgctgtaaca |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| | ||||| |||| ||||||||||| | | |||||||||||||||||||||||| |
|
|
| T |
7522494 |
taatgtgttgaagcccctctggtaaatatttcatttttgggattgtattgaataccaatactttgaggttcgtgaattctttccatttcatgctgtaaca |
7522395 |
T |
|
| Q |
101 |
accatcttcatcattgcacggatcaaactcctcgcaattgaagatgcccagttcacacaatgtacttagatgttgaaagactccacggagagatttcaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| | || |||| ||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7522394 |
accatcttcatcattgcacggatcaaactcctcgcaattgacgatacacaattcagacagtgtacttagatgttgaaagactccactgagagatttcaaa |
7522295 |
T |
|
| Q |
201 |
ttgagcatggaatatnnnnnnngatactctacttttgaataattgactacttgctgtaatat |
262 |
Q |
| |
|
||||| ||||| | | ||| ||||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
7522294 |
ttgagtatggattctatctgtagatcctctagtttggaatgattgactacttgctgtaatat |
7522233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 7716141 - 7716455
Alignment:
| Q |
1 |
taatgtgttgaagcccctcaggtaaatatttcatttttgggatttttatgaattccaacactttgaggtttgctagttctttccatttcatgctgtaaca |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||| | |||||||||||||||| ||||| ||| |
|
|
| T |
7716141 |
taatgtgctgaagcccctcaggtaaatatttcatttttgggatttcatagaactgcaacaatttgaggttcgtaagttctttccatttcacgctgt-aca |
7716239 |
T |
|
| Q |
101 |
accatcttcatcattgcacggatcaaactcctcgcaattgaagatgcccagttcacacaatgtacttagatgttgaaagactccacggagagatttcaaa |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||| | || |||| ||| |||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
7716240 |
accatcttcatcatcgcacggatcaaactcctcgcaattatcgatacacaattcagacagtgtacttagatgttgaaagactccacagagagatttataa |
7716339 |
T |
|
| Q |
201 |
ttgagcatggaatatnnnnnnngatactctacttttgaataattgactacttgctgtaatatcttctctgtgacatttgaaagaattacttccctgacat |
300 |
Q |
| |
|
||||| ||| || | ||||||||||||| |||| ||||||| || |||||||||||||||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
7716340 |
ttgagtatgaaacctatctgaagatactctactttggaatgattgactgctagctgtaatatcttctctgtgacattttcaagcattactttcctgacat |
7716439 |
T |
|
| Q |
301 |
gtttgtgttgtggaat |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7716440 |
gtttgtgttgtggaat |
7716455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 7719970 - 7720285
Alignment:
| Q |
1 |
taatgtgttgaagcccctcaggtaaatatttcatttttgggatttttatgaattccaacactttgaggtttgctagttctttccatttcatgctgtaaca |
100 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
7719970 |
taatgtgctgaagcccctcaggcaaatatttcatttttgggattcctatgaattgcaacactttgaggttcgtgagttctttccatttcatgctgtaaca |
7720069 |
T |
|
| Q |
101 |
accatcttcatcattgcacggatcaaactcctcgcaattgaagatgcccagttcacacaatgtacttagatgttgaaagactccacggagagatttcaaa |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| ||| | || |||||| | ||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
7720070 |
accgtcttcatcattgcacggatcaaactcctcgcaattgaggatacgcaattcacagagtgtacctagatgttgaaagactccactaagagatttcaaa |
7720169 |
T |
|
| Q |
201 |
ttgagcatggaatatnnnnnnngatactctacttttgaataattgactacttgctgtaatatcttctctgtgacatttgaaagaattacttccctgacat |
300 |
Q |
| |
|
||||| ||||| | | || |||||| ||| |||| ||||||| || || |||| ||| ||||| |||| | | ||||||||||||||||| || |
|
|
| T |
7720170 |
ttgagtatggattctatctcaagagactctagtttggaatgattgactgctggcggtaacatcgtctctctgacctctctaagaattacttccctgatat |
7720269 |
T |
|
| Q |
301 |
gtttgtgttgtggaat |
316 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
7720270 |
atgtgtgttgtggaat |
7720285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 10477756 - 10477960
Alignment:
| Q |
1 |
taatgtgttgaagcccctcaggtaaatatttcatttttgggatttttatgaattccaacactttgaggtttgctagttctttccatttcatgctgtaaca |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10477756 |
taatgtgttgaagcccctcagccaaatatttcatttttgggatttctatgaattccaacactttgaggttcttgagttctttccatttcatgctgtaaca |
10477855 |
T |
|
| Q |
101 |
accatcttcatcattgcacggatcaaactcctcgcaattgaagatgcccagttcacacaatgtacttagatgttgaaagactccacggagagatttcaaa |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||| |||| | ||||||| ||| |||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
10477856 |
accattttcatcattgcacggatcaaactcctcacaattttagatacacagttcagacagtgtacttagatgttgaaagactccacagagagatttaaaa |
10477955 |
T |
|
| Q |
201 |
ttgag |
205 |
Q |
| |
|
||||| |
|
|
| T |
10477956 |
ttgag |
10477960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 7503026 - 7502711
Alignment:
| Q |
1 |
taatgtgttgaagcccctcaggtaaatatttcatttttgggatttttatgaattccaacactttgaggtttgctagttctttccatttcatgctgtaaca |
100 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||||||||||||| ||| ||||| |||||||| || | |||||||||||||||||||| ||||| |
|
|
| T |
7503026 |
taatgtgctgaagccccttaggtaaatttttcatttttgggattgcatggaactccaaaactttgagtttggtgagttctttccatttcatgctctaaca |
7502927 |
T |
|
| Q |
101 |
accatcttcatcattgcacggatcaaactcctcgcaattgaagatgcccagttcacacaatgtacttagatgttgaaagactccacggagagatttcaaa |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||| | ||| | || |||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7502926 |
accatcttcatcattgcatggatcaaactcctcacaatagcggatacgcaattcacacagtgtacttagatgttgaaagactccactaagagatttcaaa |
7502827 |
T |
|
| Q |
201 |
ttgagcatggaatatnnnnnnngatactctacttttgaataattgactacttgctgtaatatcttctctgtgacatttgaaagaattacttccctgacat |
300 |
Q |
| |
|
||||||||| || | ||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||| |||||| | ||| || |
|
|
| T |
7502826 |
ttgagcatgaaaaacatctgaagatactctactttggaataattgactacttgctttaatatcttctctgtgacctttctaagagttactttcttgatat |
7502727 |
T |
|
| Q |
301 |
gtttgtgttgtggaat |
316 |
Q |
| |
|
| ||||||| ||||| |
|
|
| T |
7502726 |
atgtgtgttgaggaat |
7502711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 7484437 - 7484176
Alignment:
| Q |
1 |
taatgtgttgaagcccctcaggtaaatatttcatttttgggatttttatgaattccaacactttgaggtttgctagttctttccatttcatgctgtaaca |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||| | | |||| ||||| ||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
7484437 |
taatgtgctgaagcccctcaggcaaatatttcatttttgggatatctttgaaaatcaacaatttgaggttcgagagttctttccatttcatgctgtaaca |
7484338 |
T |
|
| Q |
101 |
accatcttcatcattgcacggatcaaactcctcgcaattgaagatgcccagttcacacaatgtacttagatgttgaaagactccacggagagatttcaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| | || |||||| | ||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
7484337 |
accatcttcatcattgcacggatcaaactcctcgcaattgaggatacgcaattcacagagtgtacctagatgttgaaagactccactaagagatttcaaa |
7484238 |
T |
|
| Q |
201 |
ttgagcatggaatatnnnnnnngatactctacttttgaataattgactacttgctgtaatat |
262 |
Q |
| |
|
||||| ||||| | | || |||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
7484237 |
ttgagtatggattctatattaagagactctactttggaatgattgactagttgctgtaatat |
7484176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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