View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3634_low_21 (Length: 289)
Name: NF3634_low_21
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3634_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 37617768 - 37618029
Alignment:
| Q |
18 |
acttggagtccccaacaacttttgtaacaatgccaacccaccagccatcattgtgaaaagcatcaacttcgtcgaaaaatttgaactcagcaacatcatc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37617768 |
acttggagtccccaacaacttttgtaacaataccaacccaccagccatcattgtgaaaagcatcaacttcgtcgaaaaatttgaactcagcaacatcatc |
37617867 |
T |
|
| Q |
118 |
agtctttggtggacgaggcctaatatgccggatatccaactcctctctcaaaggcttagaatcatcatcgatcagggcctcatactcgacgacaaaccta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37617868 |
agtctttggtggacgaggcctaatatgccggatattcaactcctctctcaaaggcttagaatcatcatcgatcagggcctcatactcgacgacaaaccta |
37617967 |
T |
|
| Q |
218 |
aaatgtcgctttaattcaacgatggtgccaagaaaccaagcccctttgagacctttttcatc |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37617968 |
aaatgtcgctttaattcaacgatggtgccaagaaaccaagcccctttgagacccttttcatc |
37618029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 37631021 - 37631170
Alignment:
| Q |
18 |
acttggagtccccaacaacttttgtaacaatgccaacccaccagccatcattgtgaaaagcatcaacttcgtcgaaaaatttgaactcagcaacatcatc |
117 |
Q |
| |
|
||||||||||||||| |||||| | ||||| ||||||||||| ||||| || | | ||||||||||||| || | || || |||| |||||| ||| | |
|
|
| T |
37631021 |
acttggagtccccaagaactttcgaaacaacaccaacccaccacccatcgttataataagcatcaacttcatcaagaacttcaaactgagcaacttcagc |
37631120 |
T |
|
| Q |
118 |
agtctttggtggacgaggcctaatatgccggatatccaactcctctctca |
167 |
Q |
| |
|
||| ||||||||||||||||| || ||| ||||||| | |||||||||| |
|
|
| T |
37631121 |
agtttttggtggacgaggcctcatttgcaggatatcaacatcctctctca |
37631170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University