View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3634_low_24 (Length: 261)

Name: NF3634_low_24
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3634_low_24
NF3634_low_24
[»] chr6 (8 HSPs)
chr6 (1-71)||(25054571-25054641)
chr6 (1-68)||(3962670-3962737)
chr6 (1-68)||(30780401-30780468)
chr6 (1-68)||(17193740-17193807)
chr6 (16-69)||(17193887-17193940)
chr6 (16-69)||(25054438-25054491)
chr6 (16-69)||(30780268-30780321)
chr6 (16-68)||(3962538-3962590)
[»] chr5 (11 HSPs)
chr5 (1-69)||(8881021-8881089)
chr5 (1-68)||(11772873-11772940)
chr5 (1-68)||(17534545-17534612)
chr5 (16-68)||(11772741-11772793)
chr5 (16-68)||(17534692-17534744)
chr5 (26-72)||(8881095-8881141)
chr5 (35-69)||(244234-244268)
chr5 (39-69)||(11772956-11772986)
chr5 (18-72)||(43513814-43513868)
chr5 (18-68)||(43514489-43514539)
chr5 (35-68)||(245988-246021)
[»] chr8 (10 HSPs)
chr8 (1-68)||(10756582-10756649)
chr8 (1-68)||(29740041-29740108)
chr8 (16-70)||(29739907-29739961)
chr8 (16-68)||(10756450-10756502)
chr8 (12-65)||(11128887-11128940)
chr8 (88-131)||(27775815-27775858)
chr8 (176-246)||(27775971-27776039)
chr8 (32-68)||(27887565-27887601)
chr8 (32-68)||(27946223-27946259)
chr8 (32-68)||(28026466-28026502)
[»] chr3 (5 HSPs)
chr3 (1-67)||(34630720-34630786)
chr3 (16-69)||(34630588-34630641)
chr3 (18-68)||(22899519-22899569)
chr3 (2-68)||(46905406-46905472)
chr3 (16-68)||(46906267-46906319)
[»] chr4 (5 HSPs)
chr4 (1-65)||(51268457-51268521)
chr4 (16-68)||(51268324-51268376)
chr4 (18-68)||(29337158-29337208)
chr4 (18-68)||(44891723-44891773)
chr4 (32-64)||(12157302-12157334)
[»] chr2 (3 HSPs)
chr2 (12-70)||(18900622-18900680)
chr2 (18-69)||(45627809-45627860)
chr2 (18-69)||(44995643-44995694)
[»] chr1 (4 HSPs)
chr1 (12-67)||(45970002-45970057)
chr1 (18-68)||(26853111-26853161)
chr1 (16-70)||(38459408-38459461)
chr1 (16-68)||(38460695-38460746)
[»] chr7 (2 HSPs)
chr7 (16-68)||(43406316-43406368)
chr7 (35-69)||(43405458-43405492)


Alignment Details
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 25054571 - 25054641
Alignment:
Q  1 tgatgtgtcagcatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctaa 71  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25054571 tgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctaa 25054641  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 3962670 - 3962737
Alignment:
Q  1 tgatgtgtcagcatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3962670 tgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 3962737  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 30780401 - 30780468
Alignment:
Q  1 tgatgtgtcagcatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30780401 tgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 30780468  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 17193807 - 17193740
Alignment:
Q  1 tgatgtgtcagcatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17193807 tgatgtgtcaacatattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 17193740  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 17193887 - 17193940
Alignment:
Q  16 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17193887 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 17193940  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 25054491 - 25054438
Alignment:
Q  16 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25054491 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 25054438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 30780321 - 30780268
Alignment:
Q  16 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30780321 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 30780268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 3962590 - 3962538
Alignment:
Q  16 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3962590 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 3962538  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 8881089 - 8881021
Alignment:
Q  1 tgatgtgtcagcatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 69  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8881089 tgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 8881021  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 11772873 - 11772940
Alignment:
Q  1 tgatgtgtcagcatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11772873 tgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 11772940  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 17534612 - 17534545
Alignment:
Q  1 tgatgtgtcagcatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17534612 tgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 17534545  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 11772793 - 11772741
Alignment:
Q  16 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11772793 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 11772741  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 17534692 - 17534744
Alignment:
Q  16 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17534692 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 17534744  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 8881095 - 8881141
Alignment:
Q  26 gtgttgaaagagtgtgtttgagagtttgtccttagcatttctctaat 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8881095 gtgttgaaagagtgtgtttgagagtttgtccttagcatttctctaat 8881141  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 244268 - 244234
Alignment:
Q  35 gagtgtgtttgagagtttgtccttagcatttctct 69  Q
    |||||||||||||||||||||| ||||||||||||    
T  244268 gagtgtgtttgagagtttgtccgtagcatttctct 244234  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 69
Target Start/End: Original strand, 11772956 - 11772986
Alignment:
Q  39 gtgtttgagagtttgtccttagcatttctct 69  Q
    |||||||||||||||||||||||||||||||    
T  11772956 gtgtttgagagtttgtccttagcatttctct 11772986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 43513868 - 43513814
Alignment:
Q  18 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctaat 72  Q
    ||||||||||||| |||||||||||| | |||| ||||| |||||||| ||||||    
T  43513868 attggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttatctaat 43513814  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 43514489 - 43514539
Alignment:
Q  18 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    ||||||||||||| |||||||||||| | |||| ||||| |||||||||||    
T  43514489 attggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctc 43514539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 245988 - 246021
Alignment:
Q  35 gagtgtgtttgagagtttgtccttagcatttctc 68  Q
    |||||||||||||||||||||| |||||||||||    
T  245988 gagtgtgtttgagagtttgtccatagcatttctc 246021  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10756582 - 10756649
Alignment:
Q  1 tgatgtgtcagcatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10756582 tgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 10756649  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 29740041 - 29740108
Alignment:
Q  1 tgatgtgtcagcatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29740041 tgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 29740108  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 29739961 - 29739907
Alignment:
Q  16 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29739961 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 29739907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 10756502 - 10756450
Alignment:
Q  16 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10756502 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 10756450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 11128887 - 11128940
Alignment:
Q  12 catgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcattt 65  Q
    ||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  11128887 catgtcattggagggtgttaaaagagtgtgtttgagagtgtgtccttagcattt 11128940  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 27775815 - 27775858
Alignment:
Q  88 aaggatcatgttaaagattctctaaatattaattatttattgaa 131  Q
    |||||||||||||||||||||  |||||||||||||||||||||    
T  27775815 aaggatcatgttaaagattctacaaatattaattatttattgaa 27775858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 27775971 - 27776039
Alignment:
Q  176 tatgagtagcttaaatagtttgaataaaatgttaaaggacatggaggtcttgagttttaacccaaggaaat 246  Q
    |||||||||||||||||| ||||||||||||||  | || ||||||||| |||||||||||  ||||||||    
T  27775971 tatgagtagcttaaatagattgaataaaatgtt--atgagatggaggtcctgagttttaactgaaggaaat 27776039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 27887565 - 27887601
Alignment:
Q  32 aaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    |||||||||| | ||||||||||||||||||||||||    
T  27887565 aaagagtgtgatagagagtttgtccttagcatttctc 27887601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 27946223 - 27946259
Alignment:
Q  32 aaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    |||||||||| | ||||||||||||||||||||||||    
T  27946223 aaagagtgtgatagagagtttgtccttagcatttctc 27946259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 28026466 - 28026502
Alignment:
Q  32 aaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    |||||||||| | ||||||||||||||||||||||||    
T  28026466 aaagagtgtgatagagagtttgtccttagcatttctc 28026502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 34630720 - 34630786
Alignment:
Q  1 tgatgtgtcagcatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttct 67  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34630720 tgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttct 34630786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 34630641 - 34630588
Alignment:
Q  16 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34630641 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 34630588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 22899519 - 22899569
Alignment:
Q  18 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22899519 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 22899569  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 46905472 - 46905406
Alignment:
Q  2 gatgtgtcagcatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    ||||| ||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  46905472 gatgtatcaacatgttattggagtgtgttgaaagtgtgtgtttgagagtttatccttagcatttctc 46905406  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 46906267 - 46906319
Alignment:
Q  16 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  46906267 ttattggagtgtgtaaaaagagtgtgtttgagggtttgtccttagcatttctc 46906319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 51268457 - 51268521
Alignment:
Q  1 tgatgtgtcagcatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcattt 65  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51268457 tgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcattt 51268521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 51268376 - 51268324
Alignment:
Q  16 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51268376 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 51268324  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 29337208 - 29337158
Alignment:
Q  18 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    ||||| ||||||| |||||||||||| |||||| ||||| |||||||||||    
T  29337208 attggtgtgtgttaaaagagtgtgttagagagtgtgtccctagcatttctc 29337158  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 44891773 - 44891723
Alignment:
Q  18 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    ||||||||||||| |||||||||||| | |||| ||||| |||||||||||    
T  44891773 attggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctc 44891723  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 12157302 - 12157334
Alignment:
Q  32 aaagagtgtgtttgagagtttgtccttagcatt 64  Q
    |||||||||||| ||||||||||||||||||||    
T  12157302 aaagagtgtgttagagagtttgtccttagcatt 12157334  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 18900680 - 18900622
Alignment:
Q  12 catgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 70  Q
    ||||| ||||||| ||||| ||||||||||||||||||| |||||||||||||||||||    
T  18900680 catgtcattggagagtgttaaaagagtgtgtttgagagtgtgtccttagcatttctcta 18900622  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 45627860 - 45627809
Alignment:
Q  18 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 69  Q
    ||||||||||||| |||||||||||| | |||||||||| ||||||||||||    
T  45627860 attggagtgtgttaaaagagtgtgttagggagtttgtccctagcatttctct 45627809  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 44995694 - 44995643
Alignment:
Q  18 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 69  Q
    ||||||||||||| ||||||| |||| |||||||||||| | ||||||||||    
T  44995694 attggagtgtgttaaaagagtatgttagagagtttgtccctggcatttctct 44995643  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 45970057 - 45970002
Alignment:
Q  12 catgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttct 67  Q
    ||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  45970057 catgtcattggagagtgttaaaagagtgtgtttgagagtgtgtccttagcatttct 45970002  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 26853111 - 26853161
Alignment:
Q  18 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    ||||||||||||| |||||||||||| | |||| ||||| |||||||||||    
T  26853111 attggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctc 26853161  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 38459461 - 38459408
Alignment:
Q  16 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 70  Q
    ||||||||||||||| |||||||||||| | |||| ||||| |||||||||||||    
T  38459461 ttattggagtgtgtt-aaagagtgtgttagggagtgtgtccctagcatttctcta 38459408  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 38460695 - 38460746
Alignment:
Q  16 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    ||||||||||||||| |||||||||||| | |||| ||||| |||||||||||    
T  38460695 ttattggagtgtgtt-aaagagtgtgttagggagtgtgtccctagcatttctc 38460746  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 43406316 - 43406368
Alignment:
Q  16 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 68  Q
    ||||||||||||||  |||||||||||||||| |||| |||||||||||||||    
T  43406316 ttattggagtgtgtcaaaagagtgtgtttgagggtttatccttagcatttctc 43406368  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 43405492 - 43405458
Alignment:
Q  35 gagtgtgtttgagagtttgtccttagcatttctct 69  Q
    |||||||||||||||||||||||||||||||||||    
T  43405492 gagtgtgtttgagagtttgtccttagcatttctct 43405458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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