View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3634_low_27 (Length: 250)
Name: NF3634_low_27
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3634_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 40588055 - 40588276
Alignment:
| Q |
11 |
cacagaccaacccctacgcattgtgcggtaaactgaagccaacacctaaagattttgcactttcacatgaaatttcaagacacgtctcaaccattactca |
110 |
Q |
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| T |
40588055 |
cacacaccaacccctacgcattgtgcggtaaactgaagccaacacctaaagattttgcactttcacatgagatttcaagacacgtctcaaccattactca |
40588154 |
T |
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| Q |
111 |
acgataacaactacattgctcatcaataaaaggttgatagaggttactcatctgagttgacaccaatcaaaatcattcatttatagataacctccatcct |
210 |
Q |
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| T |
40588155 |
acgataacaactacattactcatcaataaaaggttggcagaggttactcatctgagttgacaccaatcaaaatcattcatttatagataacctccatcct |
40588254 |
T |
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| Q |
211 |
cgttgctcaatattgatatact |
232 |
Q |
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||||| |||||||||||||||| |
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| T |
40588255 |
cgttgttcaatattgatatact |
40588276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 194
Target Start/End: Complemental strand, 5449671 - 5449640
Alignment:
| Q |
163 |
tgagttgacaccaatcaaaatcattcatttat |
194 |
Q |
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| T |
5449671 |
tgagttgacaccaatcaaaatcattcatttat |
5449640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 46148027 - 46148078
Alignment:
| Q |
143 |
gttgatagaggttactcatctgagttgacaccaatcaaaatcattcatttat |
194 |
Q |
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| T |
46148027 |
gttgatagaggttactcatatgagttgacatcaatcaaaaccattcatttat |
46148078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 15880641 - 15880613
Alignment:
| Q |
164 |
gagttgacaccaatcaaaatcattcattt |
192 |
Q |
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| T |
15880641 |
gagttgacaccaatcaaaatcattcattt |
15880613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 36328332 - 36328257
Alignment:
| Q |
117 |
acaactacattgctcatcaataaaaggttgatagaggttactcat-ctgagttgacaccaatcaaaatcattcattt |
192 |
Q |
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| T |
36328332 |
acaactacataactcatcaacaaaaggtgggtagag-ttacccatgctgagttggcaccaatcaaaatcagtcattt |
36328257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 9612235 - 9612280
Alignment:
| Q |
149 |
agaggttactcatctgagttgacaccaatcaaaatcattcatttat |
194 |
Q |
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| T |
9612235 |
agaggttactcatttgagttagcactaatcaaaatcattcatttat |
9612280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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