View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3634_low_28 (Length: 247)
Name: NF3634_low_28
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3634_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 26160122 - 26160362
Alignment:
| Q |
1 |
taaagctcggcgtcaaagctcgcggttgtaatggtttatcttacacgctaaattacgcaggtatgctatttgcaccctctttgaatttctaataattatt |
100 |
Q |
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| T |
26160122 |
taaagctcggcgtcaaagctcgcggttgtaatggtttatcttacacgctaaattacgcaggtatgctatttgcaccctctttcaatattgtttaattatt |
26160221 |
T |
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| Q |
101 |
atattattttgagaaattgtattgattttaagatttgttggtggtgttttgatagataaaaaagagaaatttgatgaattggttgaagataaaggtgtta |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26160222 |
atattattttgagaaattgttttgattttaagatttgttggtggtgttttgatagataaaaaagagaagtttgatgaattggttgaagataaaggtgtta |
26160321 |
T |
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| Q |
201 |
agattttgattgatcctaaggctcttatgcattttcttgga |
241 |
Q |
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|||| ||||||||||||||||||||||||||| || ||||| |
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| T |
26160322 |
agatattgattgatcctaaggctcttatgcatgttgttgga |
26160362 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 32390794 - 32390830
Alignment:
| Q |
157 |
taaaaaagagaaatttgatgaattggttgaagataaa |
193 |
Q |
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|||||| ||||||| |||||||||||||||||||||| |
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| T |
32390794 |
taaaaacgagaaatatgatgaattggttgaagataaa |
32390830 |
T |
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