View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3634_low_30 (Length: 240)

Name: NF3634_low_30
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3634_low_30
NF3634_low_30
[»] chr3 (2 HSPs)
chr3 (1-226)||(12404241-12404476)
chr3 (120-205)||(3041606-3041691)
[»] chr2 (2 HSPs)
chr2 (150-207)||(42467885-42467942)
chr2 (139-184)||(37494733-37494778)
[»] chr1 (3 HSPs)
chr1 (150-205)||(19808751-19808806)
chr1 (139-182)||(1327620-1327663)
chr1 (139-201)||(4364244-4364306)
[»] chr5 (1 HSPs)
chr5 (137-205)||(4483922-4483990)
[»] chr8 (2 HSPs)
chr8 (134-167)||(32817217-32817250)
chr8 (151-205)||(32409870-32409924)
[»] chr4 (2 HSPs)
chr4 (143-205)||(5078927-5078989)
chr4 (118-180)||(6986768-6986830)
[»] chr6 (1 HSPs)
chr6 (139-192)||(7712351-7712404)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 12404476 - 12404241
Alignment:
Q  1 atcatagctaagttcagcatcatagcaagataacaggaaaccaagatgaccattctacaacaccaacaccaaaattgtaacatgtgagaaaacactattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12404476 atcatagctaagttcagcatcatagcaagataacaggaaaccaagatgaccattctacaacaccaacaccaaaattgtaacatgtgagaaaacactattc 12404377  T
Q  101 att----------gaaaatgttgtatcattttgacacaaattggaaatcaaattttgataacaatttagatggttaatacagttcaaatatgtggtaaat 190  Q
    |||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12404376 attaaattccattgaaaatgttgtatcattttgacacaaattggaaatcaaattttgataacaatttagatggttaatacagttcaaatatgtggtaaat 12404277  T
Q  191 tatgtttagtggatgctaactgtgacaccttgttat 226  Q
    |||||||||||||| |||||||||||||||||||||    
T  12404276 tatgtttagtggatactaactgtgacaccttgttat 12404241  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 3041691 - 3041606
Alignment:
Q  120 tttgacacaaattggaaatcaaattttgataacaatttagatggttaatacagttcaaatatgtggtaaattatgtttagtggatg 205  Q
    ||||||||||||| |||| ||||  | || ||||| || ||||||||| || ||||| ||||||||| |||||  |||||||||||    
T  3041691 tttgacacaaatttgaaaacaaaaatcgacaacaacttggatggttaacaccgttcacatatgtggttaattacatttagtggatg 3041606  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 42467942 - 42467885
Alignment:
Q  150 aacaatttagatggttaatacagttcaaatatgtggtaaattatgtttagtggatgct 207  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  42467942 aacaattcagatggttaatgcagttcaaatatgtggttaattatgtttagtggatgct 42467885  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 37494733 - 37494778
Alignment:
Q  139 caaattttgataacaatttagatggttaatacagttcaaatatgtg 184  Q
    ||||||| ||||||||||| |||||||||| |||||||||||||||    
T  37494733 caaatttcgataacaatttggatggttaatgcagttcaaatatgtg 37494778  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 19808751 - 19808806
Alignment:
Q  150 aacaatttagatggttaatacagttcaaatatgtggtaaattatgtttagtggatg 205  Q
    |||||||| ||||||||| || ||||||||||||||||||||| ||||||||||||    
T  19808751 aacaatttggatggttaacaccgttcaaatatgtggtaaattacgtttagtggatg 19808806  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 1327620 - 1327663
Alignment:
Q  139 caaattttgataacaatttagatggttaatacagttcaaatatg 182  Q
    |||||||||||||||| |||||||||||| ||||||||| ||||    
T  1327620 caaattttgataacaaattagatggttaacacagttcaactatg 1327663  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 4364244 - 4364306
Alignment:
Q  139 caaattttgataacaatttagatggttaatacagttcaaatatgtggtaaattatgtttagtg 201  Q
    |||||||||| |||||||||||| |||||  || ||||||||||| || ||||||||| ||||    
T  4364244 caaattttgacaacaatttagatagttaacgcaattcaaatatgtagttaattatgttcagtg 4364306  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 4483922 - 4483990
Alignment:
Q  137 atcaaattttgataacaatttagatggttaatacagttcaaatatgtggtaaattatgtttagtggatg 205  Q
    |||||||||||| ||||||| | |||||||| ||||||||||| |||||  ||||||||| ||||||||    
T  4483922 atcaaattttgacaacaattgacatggttaacacagttcaaatgtgtggctaattatgttcagtggatg 4483990  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 167
Target Start/End: Original strand, 32817217 - 32817250
Alignment:
Q  134 gaaatcaaattttgataacaatttagatggttaa 167  Q
    ||||||||||||||||||||||||||||||||||    
T  32817217 gaaatcaaattttgataacaatttagatggttaa 32817250  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 32409924 - 32409870
Alignment:
Q  151 acaatttagatggttaatacagttcaaatatgtggtaaattatgtttagtggatg 205  Q
    |||| |||||||||||||||| |||||||||||| |   ||||||||||||||||    
T  32409924 acaaattagatggttaatacaattcaaatatgtgcttgcttatgtttagtggatg 32409870  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 5078927 - 5078989
Alignment:
Q  143 ttttgataacaatttagatggttaatacagttcaaatatgtggtaaattatgtttagtggatg 205  Q
    |||||| |||||||| |||||||||| |||||||||||| |||| |||||  |||||| ||||    
T  5078927 ttttgacaacaatttggatggttaatgcagttcaaatatatggttaattacatttagtagatg 5078989  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 6986830 - 6986768
Alignment:
Q  118 attttgacacaaattggaaatcaaattttgataacaatttagatggttaatacagttcaaata 180  Q
    ||||||||| ||||| || | ||||||| || || |||||||||||||||| |||||||||||    
T  6986830 attttgacataaattagacaacaaatttcgaaaataatttagatggttaatgcagttcaaata 6986768  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 7712404 - 7712351
Alignment:
Q  139 caaattttgataacaatttagatggttaatacagttcaaatatgtggtaaatta 192  Q
    ||||||| || |||| ||||||||||||| | |||||||||||||||| |||||    
T  7712404 caaatttcgacaacagtttagatggttaacatagttcaaatatgtggttaatta 7712351  T

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