View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3634_low_4 (Length: 543)
Name: NF3634_low_4
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3634_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 426; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 19 - 527
Target Start/End: Complemental strand, 9639774 - 9639271
Alignment:
| Q |
19 |
gattatagatacattataaatgctggggctattacagcattatgctcatcattgcttggtggaatgttgccccaggtaaaattaattggaaccctctatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9639774 |
gattatagatacattataaatgctggggctattacagcattatgctcatcattgcttggtggaatgttgccccaggtaaaattaattggaaccctctatc |
9639675 |
T |
|
| Q |
119 |
tctaaacaaaccaaagatccataaaatgattcattattcatgtgttttgttgaatgactcacagccaagaattttgatggctatggcaagggatggactt |
218 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9639674 |
tctaaacaaaccaaagatccctaaaatgattcattattcatgtgttttgttgaatgactcacagccaagaattttgatggctatggcaagggatggactt |
9639575 |
T |
|
| Q |
219 |
ctaccatcannnnnnnctgacataaataagcagagccaagttcctgtaaagagtaccatagttactggccttgttgctgcatccttggcctttttcatgg |
318 |
Q |
| |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9639574 |
ctaccaccatttttttctgacataaataagcagagccaagttcctgtaaagagtaccatagttactggccttgttgctgcatccttggcctttttcatgg |
9639475 |
T |
|
| Q |
319 |
atgtctctcaacttgctggcatggtaagtcttattagataacatttgttgttaccaaaggcnnnnnnnntgttactaatcaatatctgtgttttacaagg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||| |
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| T |
9639474 |
atgtctctcaacttgctggcatggtaagtcttattagataacatttgttgttgccaaaggc-aaaaaaatgttact----aatatctgtgttttacaaga |
9639380 |
T |
|
| Q |
419 |
tatttatgttaaaacttgcaggaattatagtactaatgtttactttgcttgtgttctacaggttagtgtaggcactcttcttgcattcacaatagcatca |
518 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9639379 |
tatttatgttaaaacttgcaggaattatagtactaatgtttactttgcttgtgttctacaggttagtgtaggcactcttcttgcattcacaatagcatca |
9639280 |
T |
|
| Q |
519 |
atatctgtg |
527 |
Q |
| |
|
||||||||| |
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|
| T |
9639279 |
atatctgtg |
9639271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 171 - 349
Target Start/End: Complemental strand, 9648744 - 9648566
Alignment:
| Q |
171 |
aatgactcacagccaagaattttgatggctatggcaagggatggacttctaccatcannnnnnnctgacataaataagcagagccaagttcctgtaaaga |
270 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||| ||| | || ||| || |||| ||||||||||| ||||| ||||||||||||| |
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| T |
9648744 |
aatgcctctcagccaagaattttgatggctatggcaagggacggattgctgccaccatttttttctgatataaataagcacagccatgttcctgtaaaga |
9648645 |
T |
|
| Q |
271 |
gtaccatagttactggccttgttgctgcatccttggcctttttcatggatgtctctcaacttgctggcatggtaagtct |
349 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9648644 |
gtaccatagttaccggccttgttgctgccgccttggcatttttcatggatgtctctcaacttgctggcatggtaagtct |
9648566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 171 - 349
Target Start/End: Complemental strand, 9654761 - 9654583
Alignment:
| Q |
171 |
aatgactcacagccaagaattttgatggctatggcaagggatggacttctaccatcannnnnnnctgacataaataagcagagccaagttcctgtaaaga |
270 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||| ||| | || ||| || |||| ||||||||||| ||||| ||||||||||||| |
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| T |
9654761 |
aatgcctctcagccaagaattttgatggctatggcaagggacggattgctgccaccatttttttctgatataaataagcacagccatgttcctgtaaaga |
9654662 |
T |
|
| Q |
271 |
gtaccatagttactggccttgttgctgcatccttggcctttttcatggatgtctctcaacttgctggcatggtaagtct |
349 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9654661 |
gtaccatagttaccggccttgttgctgccgccttggcatttttcatggatgtctctcaacttgctggcatggtaagtct |
9654583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 180 - 349
Target Start/End: Complemental strand, 9628651 - 9628482
Alignment:
| Q |
180 |
cagccaagaattttgatggctatggcaagggatggacttctaccatcannnnnnnctgacataaataagcagagccaagttcctgtaaagagtaccatag |
279 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||| || ||| || |||| ||||||||||| ||||| |||||||| ||||||||||||| |
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|
| T |
9628651 |
cagccaagacttttgatggcaatggcaagggatggactactgccaccatttttctctgaaataaataagcacagccatgttcctgttaagagtaccatag |
9628552 |
T |
|
| Q |
280 |
ttactggccttgttgctgcatccttggcctttttcatggatgtctctcaacttgctggcatggtaagtct |
349 |
Q |
| |
|
| |||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
9628551 |
tcactggccttgttcctgcagccttggcttttttcatggatgtctctcaacttgctgggatggtaagtct |
9628482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 152 - 337
Target Start/End: Complemental strand, 9614848 - 9614663
Alignment:
| Q |
152 |
ttattcatgtgttttgttgaatgactcacagccaagaattttgatggctatggcaagggatggacttctaccatcannnnnnnctgacataaataagcag |
251 |
Q |
| |
|
||||| || ||||||||| |||| || |||||||||||||||||||||||||||||||||||||| | ||| || |||||||||||||||| |
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|
| T |
9614848 |
ttattgatatgttttgtttaatgcttctcagccaagaattttgatggctatggcaagggatggactattgccaccatttttttctgacataaataagcac |
9614749 |
T |
|
| Q |
252 |
agccaagttcctgtaaagagtaccatagttactggccttgttgctgcatccttggcctttttcatggatgtctctcaacttgctgg |
337 |
Q |
| |
|
||||| |||||||| ||||||||||| || |||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||| |
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| T |
9614748 |
agccatgttcctgttaagagtaccattgtcactggccttgttcctgcagccttggcatttttcatggatgtctctcaactttctgg |
9614663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 9649821 - 9649726
Alignment:
| Q |
20 |
attatagatacattataaatgctggggctattacagcattatgctcatcattgcttggtggaatgttgccccaggtaaaattaattggaaccctct |
115 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| |||||| | || |||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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|
| T |
9649821 |
attacagatacattataaatgccggggctatcacagcactttgttcatcattgcttggtggaatgttgcctcaggtaaaactaattggaaccctct |
9649726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 9655838 - 9655743
Alignment:
| Q |
20 |
attatagatacattataaatgctggggctattacagcattatgctcatcattgcttggtggaatgttgccccaggtaaaattaattggaaccctct |
115 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| |||||| | || |||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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|
| T |
9655838 |
attacagatacattataaatgccggggctatcacagcactttgttcatcattgcttggtggaatgttgcctcaggtaaaactaattggaaccctct |
9655743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 9615150 - 9615073
Alignment:
| Q |
19 |
gattatagatacattataaatgctggggctattacagcattatgctcatcattgcttggtggaatgttgccccaggta |
96 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||| |
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|
| T |
9615150 |
gattacagatacattataaatgctggggctcttacagcactatgctcatcattgcttggaacaatgttgccccaggta |
9615073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 451 - 527
Target Start/End: Complemental strand, 9613859 - 9613783
Alignment:
| Q |
451 |
ctaatgtttactttgcttgtgttctacaggttagtgtaggcactcttcttgcattcacaatagcatcaatatctgtg |
527 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||| || ||||| ||||| |
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|
| T |
9613859 |
ctaatgtttattttgcttgtcttctacaggttagtgtaggcactcttattgcattcacaatatcagcaataactgtg |
9613783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 442 - 527
Target Start/End: Complemental strand, 9648392 - 9648307
Alignment:
| Q |
442 |
attatagtactaatgtttactttgcttgtgttctacaggttagtgtaggcactcttcttgcattcacaatagcatcaatatctgtg |
527 |
Q |
| |
|
||||||||||||| || || ||||||||| |||||||||||||||| || ||||||||||||||||| || ||| ||||||||||| |
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|
| T |
9648392 |
attatagtactaaagtgtattttgcttgtcttctacaggttagtgttggtactcttcttgcattcaccattgcagcaatatctgtg |
9648307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 442 - 527
Target Start/End: Complemental strand, 9654409 - 9654324
Alignment:
| Q |
442 |
attatagtactaatgtttactttgcttgtgttctacaggttagtgtaggcactcttcttgcattcacaatagcatcaatatctgtg |
527 |
Q |
| |
|
||||||||||||| || || ||||||||| |||||||||||||||| || ||||||||||||||||| || ||| ||||||||||| |
|
|
| T |
9654409 |
attatagtactaaagtgtattttgcttgtcttctacaggttagtgttggtactcttcttgcattcaccattgcagcaatatctgtg |
9654324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 443 - 523
Target Start/End: Complemental strand, 9628036 - 9627956
Alignment:
| Q |
443 |
ttatagtactaatgtttactttgcttgtgttctacaggttagtgtaggcactcttcttgcattcacaatagcatcaatatc |
523 |
Q |
| |
|
|||||||||||||||||| |||| |||| || ||||||||||||||||||||||| ||||||||||| || || ||||||| |
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|
| T |
9628036 |
ttatagtactaatgtttattttgtttgtattttacaggttagtgtaggcactcttattgcattcacagtatcagcaatatc |
9627956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 9629712 - 9629639
Alignment:
| Q |
25 |
agatacattataaatgctggggctattacagcattatgctcatcattgcttggtggaatgttgccccaggtaaa |
98 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| |||||||| || ||||||| | |||||||||||||||| |
|
|
| T |
9629712 |
agatacattataaatgctggtgctcttacagcactatgctcagcaatgcttggaacagtgttgccccaggtaaa |
9629639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 163 - 348
Target Start/End: Original strand, 33644474 - 33644659
Alignment:
| Q |
163 |
ttttgttgaatgactcacagccaagaattttgatggctatggcaagggatggacttctaccatcannnnnnnctgacataaataagcagagccaagttcc |
262 |
Q |
| |
|
||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| || ||| || ||||||||||||||| | | |||||| |
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|
| T |
33644474 |
ttttgttcaatgtttcacagccacgaattttgatggctatggcaagggatggactactgccaccatttttttgtgacataaataagcacactctagttcc |
33644573 |
T |
|
| Q |
263 |
tgtaaagagtaccatagttactggccttgttgctgcatccttggcctttttcatggatgtctctcaacttgctggcatggtaagtc |
348 |
Q |
| |
|
||| ||| | || ||| |||| ||||| | ||||||| ||| || |||| ||||| |||||| | ||||| || |||||||||| |
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|
| T |
33644574 |
tgtcaagggcacaataattaccggcctagctgctgcagtcttagcattttctatggaagtctctgatcttgcagggatggtaagtc |
33644659 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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