View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3634_low_5 (Length: 543)

Name: NF3634_low_5
Description: NF3634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3634_low_5
NF3634_low_5
[»] chr1 (21 HSPs)
chr1 (16-535)||(9515121-9515643)
chr1 (355-408)||(18556386-18556439)
chr1 (355-404)||(2218297-2218346)
chr1 (355-408)||(6427540-6427593)
chr1 (355-408)||(9828120-9828173)
chr1 (355-408)||(32461394-32461447)
chr1 (355-408)||(37598896-37598949)
chr1 (355-408)||(12919010-12919063)
chr1 (355-408)||(40917825-40917878)
chr1 (356-408)||(1486646-1486698)
chr1 (356-408)||(17778618-17778670)
chr1 (355-407)||(18337395-18337447)
chr1 (356-408)||(29163323-29163375)
chr1 (356-403)||(42359391-42359438)
chr1 (354-404)||(3490347-3490397)
chr1 (358-404)||(48040418-48040464)
chr1 (359-408)||(5898211-5898260)
chr1 (355-400)||(16812629-16812674)
chr1 (355-408)||(34712324-34712377)
chr1 (350-382)||(5927276-5927308)
chr1 (355-403)||(15765828-15765876)
[»] chr3 (21 HSPs)
chr3 (355-408)||(41961580-41961633)
chr3 (355-408)||(14216968-14217021)
chr3 (355-408)||(14223097-14223150)
chr3 (355-408)||(8101893-8101946)
chr3 (355-404)||(11610578-11610627)
chr3 (355-408)||(27505316-27505369)
chr3 (355-408)||(34185053-34185106)
chr3 (355-408)||(55401140-55401193)
chr3 (355-403)||(4466541-4466589)
chr3 (356-408)||(4987222-4987274)
chr3 (356-408)||(28918068-28918120)
chr3 (355-408)||(10955017-10955073)
chr3 (355-409)||(17276791-17276845)
chr3 (355-405)||(40052380-40052430)
chr3 (355-408)||(15999951-16000004)
chr3 (355-408)||(18427014-18427067)
chr3 (355-408)||(20503530-20503583)
chr3 (355-404)||(25074864-25074913)
chr3 (356-401)||(29508522-29508567)
chr3 (355-400)||(49651717-49651762)
chr3 (354-382)||(28779656-28779684)
[»] scaffold0003 (1 HSPs)
scaffold0003 (355-408)||(241670-241723)
[»] chr7 (17 HSPs)
chr7 (355-408)||(598273-598326)
chr7 (355-408)||(5409772-5409825)
chr7 (355-404)||(7133213-7133262)
chr7 (355-408)||(21880217-21880270)
chr7 (355-404)||(41229238-41229287)
chr7 (355-408)||(43027405-43027458)
chr7 (355-407)||(9778571-9778623)
chr7 (361-404)||(18215144-18215187)
chr7 (355-409)||(32287404-32287458)
chr7 (355-408)||(1433524-1433577)
chr7 (355-408)||(15680874-15680927)
chr7 (355-408)||(21864873-21864926)
chr7 (355-408)||(24339718-24339771)
chr7 (355-408)||(29763130-29763183)
chr7 (355-404)||(40131940-40131989)
chr7 (355-403)||(6490786-6490834)
chr7 (355-391)||(29812599-29812635)
[»] chr6 (21 HSPs)
chr6 (355-400)||(7378052-7378097)
chr6 (355-408)||(8365449-8365502)
chr6 (355-408)||(10339055-10339108)
chr6 (355-408)||(17435275-17435328)
chr6 (357-404)||(9025448-9025495)
chr6 (365-403)||(33340895-33340933)
chr6 (355-408)||(17327591-17327644)
chr6 (355-408)||(17841530-17841583)
chr6 (355-388)||(21424745-21424778)
chr6 (354-408)||(31384995-31385049)
chr6 (354-408)||(31959215-31959269)
chr6 (365-403)||(35125165-35125203)
chr6 (355-408)||(8776909-8776962)
chr6 (355-408)||(10294183-10294236)
chr6 (355-408)||(28152163-28152216)
chr6 (355-408)||(28715360-28715413)
chr6 (355-408)||(34595199-34595252)
chr6 (355-403)||(7248439-7248487)
chr6 (355-403)||(9629464-9629512)
chr6 (355-407)||(10770608-10770660)
chr6 (355-407)||(16766774-16766826)
[»] chr4 (25 HSPs)
chr4 (355-408)||(14465006-14465059)
chr4 (357-409)||(28084588-28084640)
chr4 (359-405)||(3712458-3712504)
chr4 (355-408)||(23292927-23292980)
chr4 (356-408)||(19312411-19312463)
chr4 (355-401)||(37203324-37203370)
chr4 (355-408)||(715546-715599)
chr4 (355-408)||(752872-752925)
chr4 (355-408)||(19482744-19482797)
chr4 (355-408)||(22234820-22234873)
chr4 (356-405)||(22440559-22440608)
chr4 (355-404)||(24343582-24343631)
chr4 (355-408)||(29205533-29205586)
chr4 (359-403)||(16886677-16886721)
chr4 (355-403)||(18513176-18513224)
chr4 (355-402)||(5922532-5922579)
chr4 (355-402)||(8423659-8423706)
chr4 (355-402)||(11596298-11596345)
chr4 (354-408)||(3947701-3947755)
chr4 (355-408)||(3064869-3064922)
chr4 (355-400)||(28964189-28964234)
chr4 (355-408)||(30982808-30982861)
chr4 (355-408)||(34306745-34306798)
chr4 (355-408)||(35161101-35161154)
chr4 (355-407)||(18966575-18966627)
[»] chr2 (18 HSPs)
chr2 (355-408)||(26769587-26769640)
chr2 (355-407)||(42511323-42511375)
chr2 (355-408)||(21782745-21782798)
chr2 (355-408)||(28412422-28412475)
chr2 (355-408)||(28596534-28596587)
chr2 (355-408)||(35056944-35056997)
chr2 (355-404)||(37419823-37419872)
chr2 (356-408)||(2438661-2438713)
chr2 (355-403)||(24975256-24975304)
chr2 (355-407)||(38117100-38117152)
chr2 (355-402)||(11223794-11223841)
chr2 (359-402)||(23058389-23058432)
chr2 (355-410)||(37559040-37559095)
chr2 (355-409)||(32749755-32749809)
chr2 (355-408)||(18840954-18841007)
chr2 (354-403)||(23718089-23718138)
chr2 (354-403)||(24105761-24105810)
chr2 (355-408)||(30717460-30717513)
[»] scaffold0123 (1 HSPs)
scaffold0123 (355-407)||(44455-44507)
[»] chr5 (11 HSPs)
chr5 (355-408)||(21576686-21576739)
chr5 (357-408)||(39268541-39268592)
chr5 (358-408)||(30183625-30183675)
chr5 (355-408)||(31084393-31084446)
chr5 (355-408)||(32766873-32766926)
chr5 (355-408)||(43564946-43564999)
chr5 (355-407)||(14873588-14873640)
chr5 (355-402)||(19820329-19820376)
chr5 (356-407)||(21190998-21191049)
chr5 (362-406)||(17088358-17088402)
chr5 (355-407)||(42893426-42893478)
[»] chr8 (16 HSPs)
chr8 (356-408)||(3025616-3025668)
chr8 (355-403)||(27213595-27213643)
chr8 (355-400)||(15816059-15816104)
chr8 (355-408)||(22652052-22652105)
chr8 (355-404)||(39820498-39820546)
chr8 (358-408)||(5813657-5813707)
chr8 (359-409)||(22197676-22197726)
chr8 (355-408)||(8343392-8343445)
chr8 (355-408)||(11803335-11803388)
chr8 (355-408)||(18407784-18407837)
chr8 (355-408)||(21465488-21465541)
chr8 (355-404)||(24413500-24413549)
chr8 (355-408)||(26902105-26902158)
chr8 (355-408)||(29447520-29447573)
chr8 (355-404)||(29510234-29510283)
chr8 (355-403)||(30067969-30068017)
[»] scaffold0793 (1 HSPs)
scaffold0793 (355-408)||(4822-4875)
[»] scaffold0380 (1 HSPs)
scaffold0380 (355-408)||(8666-8719)
[»] scaffold0053 (1 HSPs)
scaffold0053 (355-408)||(8863-8916)
[»] scaffold0019 (1 HSPs)
scaffold0019 (355-407)||(71802-71854)
[»] scaffold0450 (1 HSPs)
scaffold0450 (350-405)||(8560-8615)
[»] scaffold0652 (1 HSPs)
scaffold0652 (354-404)||(402-452)
[»] scaffold0475 (1 HSPs)
scaffold0475 (355-397)||(3384-3426)
[»] scaffold0361 (1 HSPs)
scaffold0361 (341-408)||(14592-14660)
[»] scaffold0044 (1 HSPs)
scaffold0044 (361-409)||(53255-53303)


Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 16 - 535
Target Start/End: Complemental strand, 9515643 - 9515121
Alignment:
Q  16 cacaaaaatcaaatccactatcactaaagacatcaattttaccaacccaaattgggaaaaacattgtttttcaacctctaaggcataataaagtgttttc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  9515643 cacaaaaatcaaatccactatcactaaagacatcaattttaccaacccaaattgggaaaaactttgtttttcaacctctaaggcatagtaaagtgttttc 9515544  T
Q  116 accaaatagatgtgtcggaaaaatagaggcatcacttaagtgggaaaagggttataaaaatgttgaggttttcagtaaggaacatcttgctgtttcattg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9515543 accaaatagatgtgtcggaaaaatagaggcatcacttaagtgggaaaagggttataagaatgttgaggttttcagtaaggaacatcttgctgtttcattg 9515444  T
Q  216 gcttatgatgttgctcaactttctaacaaattcatcaaagaaagaggttatttcactgttgctttgtctggtggatcattgatcaagtacctaaggtatg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9515443 gcttatgatgttgctcaactttctaacaaattcatcaaagaaagaggttatttcactgttgctttgtctggtggatcattgatcaagtacctaaggtatg 9515344  T
Q  316 taatatcgtgccattattgatcttaacaatgttaaaatttatgaagcacggacacttctcag---attagccgtgtcccagtgtcggacacgtgtcaatt 412  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| |||| ||||||||  |   |||||||||||||||||||| ||||||||||||||    
T  9515343 taatatcgtgccattattgaccttaacaatgttaaaatctatgaatcacgaacacttctgggttaattagccgtgtcccagtgtcagacacgtgtcaatt 9515244  T
Q  413 tttgtaatatgagctgtcaatggtaccttaattatttatttatttctagtatgtaatatgagcaaagctttgtcaatttttgtatgttttgatttcagga 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9515243 tttgtaatatgagctgtcaatggtaccttaattatttatttatttctagtatgtaatatgagcaaagctttgtcaatttttgtatgttttcatttcagga 9515144  T
Q  513 aattggttgaatctccctatgct 535  Q
    |||||||||||||||||||||||    
T  9515143 aattggttgaatctccctatgct 9515121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 18556386 - 18556439
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||| |||||||    
T  18556386 tatgaagcacggacacttctcggattaggcgtgtcccagtgtcggatacgtgtc 18556439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 2218346 - 2218297
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacg 404  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  2218346 tatgaagcacggacactcctcagattaggcgtgtcctagtgtcggacacg 2218297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 6427593 - 6427540
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||||||||||||  ||||||||| |||||||| ||||||||||||||||    
T  6427593 tatgaagcacggacactcatcagattaggcgtgtcccggtgtcggacacgtgtc 6427540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 9828173 - 9828120
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| |||||||| ||||||||||||||||    
T  9828173 tatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtc 9828120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 32461394 - 32461447
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||||||  |||||| |||||||||||||| ||||||||||    
T  32461394 tatgaagcacggacacttcttggattaggcgtgtcccagtgtcagacacgtgtc 32461447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 37598949 - 37598896
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| ||||||||| |||||||||||||||    
T  37598949 tatgaagcacggacactcctcggattaggcgtgtcccattgtcggacacgtgtc 37598896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 12919063 - 12919010
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||| ||||||||| ||| ||||||||||| ||||| ||||||||||    
T  12919063 tatgaagcacgaacacttctcggataagccgtgtccccgtgtcagacacgtgtc 12919010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 40917878 - 40917825
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||| | ||| |||||| |||||||| ||||||||||||||||    
T  40917878 tatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtc 40917825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 1486646 - 1486698
Alignment:
Q  356 atgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||| |||||| ||| |||||| |||||||| ||||||||||||||||    
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtc 1486698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 17778670 - 17778618
Alignment:
Q  356 atgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||||| ||||||||| |||||| | |||||| ||||||||||||||||    
T  17778670 atgaagcacgaacacttctcggattaggcatgtcccggtgtcggacacgtgtc 17778618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 18337447 - 18337395
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgt 407  Q
    ||||||||||||||||| ||| ||| || | ||||||||||||||||||||||    
T  18337447 tatgaagcacggacactcctcggatcaggcatgtcccagtgtcggacacgtgt 18337395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 29163323 - 29163375
Alignment:
Q  356 atgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||||| ||||||||| ||||||||||||||| ||||| | ||||||||    
T  29163323 atgaagcacgaacacttctctgattagccgtgtcccggtgtcaggcacgtgtc 29163375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 403
Target Start/End: Original strand, 42359391 - 42359438
Alignment:
Q  356 atgaagcacggacacttctcagattagccgtgtcccagtgtcggacac 403  Q
    |||||||||||||||| ||| |||||| |||||||| |||||||||||    
T  42359391 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 42359438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 3490347 - 3490397
Alignment:
Q  354 ttatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacg 404  Q
    |||| ||||||||||||||||| ||||||  |||||||| |||||||||||    
T  3490347 ttataaagcacggacacttctcggattagatgtgtcccaatgtcggacacg 3490397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 404
Target Start/End: Original strand, 48040418 - 48040464
Alignment:
Q  358 gaagcacggacacttctcagattagccgtgtcccagtgtcggacacg 404  Q
    |||||||||||||| |||  ||||| |||||||||||||||||||||    
T  48040418 gaagcacggacactcctccaattaggcgtgtcccagtgtcggacacg 48040464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 408
Target Start/End: Original strand, 5898211 - 5898260
Alignment:
Q  359 aagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||| ||| |||||| |||||||| |||| |||||||||||    
T  5898211 aagcacggacactcctcggattagacgtgtcccggtgttggacacgtgtc 5898260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 400
Target Start/End: Complemental strand, 16812674 - 16812629
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcgga 400  Q
    ||||||||||||||||| |||||||||| |||||||| || |||||    
T  16812674 tatgaagcacggacactcctcagattaggcgtgtcccggtttcgga 16812629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 34712324 - 34712377
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||   ||||| ||||||||||||| |||||||||||    
T  34712324 tatgaagcacggacactccttgaattagacgtgtcccagtgtaggacacgtgtc 34712377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 382
Target Start/End: Original strand, 5927276 - 5927308
Alignment:
Q  350 aaatttatgaagcacggacacttctcagattag 382  Q
    |||||||||||||||||||||| ||||||||||    
T  5927276 aaatttatgaagcacggacactcctcagattag 5927308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 15765876 - 15765828
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacac 403  Q
    |||||||||||||||||  || |||||| |||||||||||||| |||||    
T  15765876 tatgaagcacggacactcttcggattaggcgtgtcccagtgtcagacac 15765828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 41961580 - 41961633
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  41961580 tatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacacgtgtc 41961633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 14217021 - 14216968
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||||||| ||||||  |||||||||||||| |||||||||    
T  14217021 tatgaagcacggacacttctcggattaggtgtgtcccagtgtcgtacacgtgtc 14216968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 14223150 - 14223097
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||||||| ||||||  |||||||||||||| |||||||||    
T  14223150 tatgaagcacggacacttctcggattaggtgtgtcccagtgtcgtacacgtgtc 14223097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 8101893 - 8101946
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||| ||||| |||||||||| ||||| |||||||| ||||||||||    
T  8101893 tatgaagcacgaacactcctcagattagacgtgtaccagtgtccgacacgtgtc 8101946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 11610627 - 11610578
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacg 404  Q
    ||||||||||||||||| |||||||||| ||||||||  |||||||||||    
T  11610627 tatgaagcacggacactcctcagattaggcgtgtcccgatgtcggacacg 11610578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 27505369 - 27505316
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| | |||||| ||||||||||||||||    
T  27505369 tatgaagcacggacactcctcggattaggcatgtcccggtgtcggacacgtgtc 27505316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 34185053 - 34185106
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| |||||||| ||||||||||| ||||    
T  34185053 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacatgtc 34185106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 55401193 - 55401140
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| |||||| | ||||||||||||||||    
T  55401193 tatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtc 55401140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 4466541 - 4466589
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacac 403  Q
    ||||||||||||||||| |||  || |||||||||||||||||||||||    
T  4466541 tatgaagcacggacactcctcgaataagccgtgtcccagtgtcggacac 4466589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 4987222 - 4987274
Alignment:
Q  356 atgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||| ||||||||| ||| |||||| |||||||| ||||||||||||||||    
T  4987222 atgaagtacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc 4987274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 28918120 - 28918068
Alignment:
Q  356 atgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||| ||||||| ||  |||||| |||||||||||||||||||||||||    
T  28918120 atgaagcagggacactccttggattaggcgtgtcccagtgtcggacacgtgtc 28918068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 10955073 - 10955017
Alignment:
Q  355 tatgaagcacggacacttctca---gattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| |||    |||||| |||||||||||||||||||||||||    
T  10955073 tatgaagcacggacactactcctcggattaggcgtgtcccagtgtcggacacgtgtc 10955017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 409
Target Start/End: Complemental strand, 17276845 - 17276791
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtca 409  Q
    ||||||||||||||||||||| ||||||  | ||| | |||||||||||||||||    
T  17276845 tatgaagcacggacacttctcggattaggtgcgtctcggtgtcggacacgtgtca 17276791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 40052430 - 40052380
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgt 405  Q
    ||||||||||| ||||| ||| |||||| |||||||| |||||||||||||    
T  40052430 tatgaagcacgaacactcctcggattaggcgtgtcccggtgtcggacacgt 40052380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 15999951 - 16000004
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||| ||||||||||| ||  |||||| |||||||| ||||||||||||||||    
T  15999951 tatgatgcacggacactccttggattaggcgtgtcccggtgtcggacacgtgtc 16000004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 18427067 - 18427014
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||| |||||||||| ||||||||||  ||||||| ||| ||||||||||||    
T  18427067 tatgaaacacggacactcctcagattaggtgtgtcccggtgccggacacgtgtc 18427014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 20503583 - 20503530
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| |||||||| ||||| |||| |||||    
T  20503583 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtc 20503530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 25074913 - 25074864
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacg 404  Q
    ||||||||||| ||||| ||| ||||||  ||||||||||||||||||||    
T  25074913 tatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacg 25074864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 401
Target Start/End: Complemental strand, 29508567 - 29508522
Alignment:
Q  356 atgaagcacggacacttctcagattagccgtgtcccagtgtcggac 401  Q
    |||||||||||||||||||  |||||| |||||||| |||||||||    
T  29508567 atgaagcacggacacttcttggattagacgtgtcccggtgtcggac 29508522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 400
Target Start/End: Original strand, 49651717 - 49651762
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcgga 400  Q
    ||||||||||||||||||||| ||||||  ||||||| ||||||||    
T  49651717 tatgaagcacggacacttctcggattaggtgtgtcccggtgtcgga 49651762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 382
Target Start/End: Complemental strand, 28779684 - 28779656
Alignment:
Q  354 ttatgaagcacggacacttctcagattag 382  Q
    |||||||||||||||||||||||||||||    
T  28779684 ttatgaagcacggacacttctcagattag 28779656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 241723 - 241670
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||||||||||||    
T  241723 tatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtc 241670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 598326 - 598273
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||||||||||||    
T  598326 tatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtc 598273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 5409772 - 5409825
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| |||||||| ||||||||||||||||    
T  5409772 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc 5409825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 7133213 - 7133262
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacg 404  Q
    |||||||||||||| || ||||||||||  ||||||||||||||||||||    
T  7133213 tatgaagcacggacgctcctcagattaggtgtgtcccagtgtcggacacg 7133262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 21880270 - 21880217
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||||||| |||||| |||||||  |||||||||| |||||    
T  21880270 tatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtc 21880217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 41229238 - 41229287
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacg 404  Q
    |||||||||||||||||||||| ||||| |||||| ||||| ||||||||    
T  41229238 tatgaagcacggacacttctcatattaggcgtgtcgcagtgacggacacg 41229287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 43027405 - 43027458
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||||||||||||  || |||||| |||||||| ||||||||||||||||    
T  43027405 tatgaagcacggacactcatcggattaggcgtgtcccggtgtcggacacgtgtc 43027458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 9778623 - 9778571
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgt 407  Q
    ||||||||||||||||| ||  |||||| |||||||| |||||||||||||||    
T  9778623 tatgaagcacggacactccttggattaggcgtgtcccggtgtcggacacgtgt 9778571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 404
Target Start/End: Original strand, 18215144 - 18215187
Alignment:
Q  361 gcacggacacttctcagattagccgtgtcccagtgtcggacacg 404  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||    
T  18215144 gcacggacactcctcagattaggcgtgtcccggtgtcggacacg 18215187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 409
Target Start/End: Original strand, 32287404 - 32287458
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtca 409  Q
    ||||||||||||||||| ||| ||||||  ||||||| ||||||||||| |||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacttgtca 32287458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 1433577 - 1433524
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| |||||||  ||||||||||| ||||    
T  1433577 tatgaagcacggacactcctcggattagacgtgtcctggtgtcggacacatgtc 1433524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 15680927 - 15680874
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| |||  ||||| |||||| | ||||||||||||||||    
T  15680927 tatgaagcacggacactcctcgaattagacgtgtctcggtgtcggacacgtgtc 15680874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 21864926 - 21864873
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||||| |||||| |||  ||||| |||||||| ||||||||||||||||    
T  21864926 tatgaagcacagacactcctcgaattagacgtgtcccggtgtcggacacgtgtc 21864873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 24339771 - 24339718
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||||||| |||| ||| |||||| |||||||| |||||||| |||||||    
T  24339771 tatgaagcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtc 24339718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 29763130 - 29763183
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| |||||||   |||||||||||||||    
T  29763130 tatgaagcacggacactcctcggattaggcgtgtcctgatgtcggacacgtgtc 29763183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 40131940 - 40131989
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacg 404  Q
    |||||||||| |||||| ||| |||||| |||||||| ||||||||||||    
T  40131940 tatgaagcacagacactcctcggattagacgtgtccctgtgtcggacacg 40131989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 6490834 - 6490786
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacac 403  Q
    ||||||||||||||||| ||| |||||  |||||||| |||||||||||    
T  6490834 tatgaagcacggacactcctcggattaagcgtgtcccggtgtcggacac 6490786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 29812599 - 29812635
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtccc 391  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  29812599 tatgaagcacggacacttctcggattaggcgtgtccc 29812635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 400
Target Start/End: Complemental strand, 7378097 - 7378052
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcgga 400  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  7378097 tatgaagcacggacacttctcagattagccgtgtcccggtgtcgga 7378052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 8365449 - 8365502
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||| ||| ||| |||||| |||||||||||||||||||||||||    
T  8365449 tatgaagcacggagactcctcggattaggcgtgtcccagtgtcggacacgtgtc 8365502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 10339055 - 10339108
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||||||| |||||    
T  10339055 tatgaagcacggacactcctccgattaggcgtgtcccagtgtcggacatgtgtc 10339108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 17435328 - 17435275
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||| |||||||||| ||||||||| ||||||||||||||| |||||||||    
T  17435328 tatgaagtacggacacttttcagattagacgtgtcccagtgtcgaacacgtgtc 17435275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 404
Target Start/End: Original strand, 9025448 - 9025495
Alignment:
Q  357 tgaagcacggacacttctcagattagccgtgtcccagtgtcggacacg 404  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||    
T  9025448 tgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacg 9025495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 403
Target Start/End: Original strand, 33340895 - 33340933
Alignment:
Q  365 ggacacttctcagattagccgtgtcccagtgtcggacac 403  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  33340895 ggacacttctcagattagacgtgtcccagtgtcggacac 33340933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 17327591 - 17327644
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| |||||||| ||||| ||||||||||    
T  17327591 tatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacacgtgtc 17327644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 17841530 - 17841583
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| |||||| ||||||||||||| ||||    
T  17841530 tatgaagcacggacactcctcggattaggcgtgtctcagtgtcggacacatgtc 17841583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 388
Target Start/End: Original strand, 21424745 - 21424778
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgt 388  Q
    ||||||||||||||||||||||||||||||||||    
T  21424745 tatgaagcacggacacttctcagattagccgtgt 21424778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 408
Target Start/End: Complemental strand, 31385049 - 31384995
Alignment:
Q  354 ttatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||||||||||||| ||  |||||| |||||||| |||| |||||||||||    
T  31385049 ttatgaagcacggacactccttggattaggcgtgtcccggtgtaggacacgtgtc 31384995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 408
Target Start/End: Complemental strand, 31959269 - 31959215
Alignment:
Q  354 ttatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||||||||||||| ||| ||||||  ||||||| ||||||||||| ||||    
T  31959269 ttatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacatgtc 31959215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 35125203 - 35125165
Alignment:
Q  365 ggacacttctcagattagccgtgtcccagtgtcggacac 403  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  35125203 ggacacttctcagaatagacgtgtcccagtgtcggacac 35125165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 8776909 - 8776962
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| ||||||  ||||| | ||||||||||||||||    
T  8776909 tatgaagcacggacactcctcggattaggtgtgtctcggtgtcggacacgtgtc 8776962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 10294236 - 10294183
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||||| |||||| ||||||||||| |||||| ||| |||||||| ||||    
T  10294236 tatgaagcacagacactcctcagattagctgtgtcctagtttcggacacatgtc 10294183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 28152216 - 28152163
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||| ||||| ||| |||||| | |||||| ||||||||||||||||    
T  28152216 tatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtc 28152163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 28715413 - 28715360
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||| |||||||||  ||||| |||||||| |||||| |||||||||    
T  28715413 tatgaagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacacgtgtc 28715360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 34595252 - 34595199
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| ||||||  ||||||| ||||| ||||||||||    
T  34595252 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtc 34595199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 7248487 - 7248439
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacac 403  Q
    ||||||||||||||||| ||| |||| | |||||||| |||||||||||    
T  7248487 tatgaagcacggacactcctcggatttgacgtgtcccggtgtcggacac 7248439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 9629512 - 9629464
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacac 403  Q
    ||||||||| ||||||| ||| |||||| |||||| |||||||||||||    
T  9629512 tatgaagcatggacactcctcggattagacgtgtctcagtgtcggacac 9629464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 10770608 - 10770660
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgt 407  Q
    ||||||||||||||||| |||||||||| | |||||| |  ||||||||||||    
T  10770608 tatgaagcacggacactcctcagattaggcatgtcccggcatcggacacgtgt 10770660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 16766826 - 16766774
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgt 407  Q
    ||||||||||||||| |  || |||||| |||||||| |||||||||||||||    
T  16766826 tatgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgt 16766774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 14465006 - 14465059
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||    
T  14465006 tatgaagcacggacactcctcagattagacgtgtcccagtgtcgaacacgtgtc 14465059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 28084640 - 28084588
Alignment:
Q  357 tgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtca 409  Q
    ||||||||||||||| ||| |||||| ||||||||||||||||||||||||||    
T  28084640 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtca 28084588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 359 - 405
Target Start/End: Original strand, 3712458 - 3712504
Alignment:
Q  359 aagcacggacacttctcagattagccgtgtcccagtgtcggacacgt 405  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||    
T  3712458 aagcacggacactcctcagattagccgtgtcccggtgtcggacacgt 3712504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 23292927 - 23292980
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| |||||||| ||||||||||||||||    
T  23292927 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc 23292980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 19312463 - 19312411
Alignment:
Q  356 atgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||| ||||||||||||||||||||| |||||| | ||||||||||||||||    
T  19312463 atgaaacacggacacttctcagattagacgtgtctcggtgtcggacacgtgtc 19312411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 401
Target Start/End: Complemental strand, 37203370 - 37203324
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggac 401  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||||    
T  37203370 tatgaagcacggacacttctcggattagacgtgtcccggtgtcggac 37203324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 715546 - 715599
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| |||||||| |||||||||| |||||    
T  715546 tatgaagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtc 715599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 752872 - 752925
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| |||||||| |||||||||| |||||    
T  752872 tatgaagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtc 752925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 19482797 - 19482744
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||| ||||| ||| ||||||  ||||||||||||||||||||||||    
T  19482797 tatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgtgtc 19482744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 22234820 - 22234873
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||| ||||||||| ||||||| ||||||  ||||||||||||||||    
T  22234820 tatgaagcacgaacacttctcggattagctgtgtcctggtgtcggacacgtgtc 22234873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 22440559 - 22440608
Alignment:
Q  356 atgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgt 405  Q
    |||||||||||||||| ||| |||||| ||||||| ||||||||||||||    
T  22440559 atgaagcacggacactcctcggattaggcgtgtcctagtgtcggacacgt 22440608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 24343631 - 24343582
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacg 404  Q
    ||||||||||||||||| |||||| ||| |||||||| ||||||||||||    
T  24343631 tatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacg 24343582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 29205586 - 29205533
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||| ||||| ||| |||||| ||||||||||||||||||| |||||    
T  29205586 tatgaagcacgaacactcctcggattaggcgtgtcccagtgtcggacatgtgtc 29205533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 16886721 - 16886677
Alignment:
Q  359 aagcacggacacttctcagattagccgtgtcccagtgtcggacac 403  Q
    |||||||||||||||| ||||||||||||| || |||||||||||    
T  16886721 aagcacggacacttctgagattagccgtgttccggtgtcggacac 16886677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 18513176 - 18513224
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacac 403  Q
    ||||||||||||||||| |||||||||| |||||||  |||||||||||    
T  18513176 tatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacac 18513224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 402
Target Start/End: Original strand, 5922532 - 5922579
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggaca 402  Q
    |||||||||  |||||| |||||||||| |||||||||||||||||||    
T  5922532 tatgaagcagagacactcctcagattaggcgtgtcccagtgtcggaca 5922579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 402
Target Start/End: Original strand, 8423659 - 8423706
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggaca 402  Q
    ||||| ||||||||||||||| |||||| |||||||| ||||||||||    
T  8423659 tatgacgcacggacacttctccgattaggcgtgtcccggtgtcggaca 8423706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 402
Target Start/End: Original strand, 11596298 - 11596345
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggaca 402  Q
    ||||||||||||||||| |||||||||| ||||||||  |||||||||    
T  11596298 tatgaagcacggacactcctcagattaggcgtgtcccgatgtcggaca 11596345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 408
Target Start/End: Original strand, 3947701 - 3947755
Alignment:
Q  354 ttatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||||||||||||| ||| ||||||  ||||||  ||||||||||||||||    
T  3947701 ttatgaagcacggacactcctcggattaggtgtgtcctggtgtcggacacgtgtc 3947755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 3064869 - 3064922
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| |||||| ||| |||||||| |||||    
T  3064869 tatgaagcacggacactcctcggattaggcgtgtctcagagtcggacatgtgtc 3064922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 400
Target Start/End: Original strand, 28964189 - 28964234
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcgga 400  Q
    ||||||||| ||||||| ||| |||||| |||||||||||||||||    
T  28964189 tatgaagcatggacactcctcggattaggcgtgtcccagtgtcgga 28964234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 30982808 - 30982861
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||||||||||||  |  |||||| |||||||| ||||||||||||||||    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtc 30982861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 34306745 - 34306798
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||| ||| | |||||||||| |||||| | ||||||||||||||||    
T  34306745 tatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtc 34306798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 35161154 - 35161101
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||||||||||||| || ||||||  |||| || ||||||||||||||||    
T  35161154 tatgaagcacggacacttttcggattaggtgtgttccggtgtcggacacgtgtc 35161101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 18966627 - 18966575
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgt 407  Q
    ||||||||||||||||| || ||||||| ||| ||||  ||||||||||||||    
T  18966627 tatgaagcacggacactccttagattaggcgtatcccgttgtcggacacgtgt 18966575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 26769640 - 26769587
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| |||||||||||||||||||||||||    
T  26769640 tatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtc 26769587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 42511323 - 42511375
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgt 407  Q
    ||||||||||||||||| ||| ||||||||||||||| |||||||||||||||    
T  42511323 tatgaagcacggacactcctcggattagccgtgtccctgtgtcggacacgtgt 42511375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 21782745 - 21782798
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| | |||||||| |||||||| |||| |||||||||||    
T  21782745 tatgaagcacggacactccacagattagacgtgtcccggtgttggacacgtgtc 21782798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 28412475 - 28412422
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||||| ||| || |||  |||||||||||||||||||||||||||||||    
T  28412475 tatgaagcactgacgctcctcgaattagccgtgtcccagtgtcggacacgtgtc 28412422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 28596587 - 28596534
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| ||||||  |||||| |||||||||||||||||    
T  28596587 tatgaagcacggacactcctcggattaggagtgtccgagtgtcggacacgtgtc 28596534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 35056997 - 35056944
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| |||||||||| |||||  | ||||||||||||||||    
T  35056997 tatgaagcacggacactcctcagattaggcgtgtttccgtgtcggacacgtgtc 35056944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 37419872 - 37419823
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacg 404  Q
    ||||||||||||||||| ||| |||||| |||||||| ||||||||||||    
T  37419872 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacg 37419823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 2438661 - 2438713
Alignment:
Q  356 atgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||||||||||| ||| |||||| |||||||| |||||||||| |||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtc 2438713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 24975256 - 24975304
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacac 403  Q
    ||||||||||||||||| ||||||||||   ||||||||||||||||||    
T  24975256 tatgaagcacggacactcctcagattagatttgtcccagtgtcggacac 24975304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 38117100 - 38117152
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgt 407  Q
    ||||||||||||||||  ||| |||||| |||||||| |||||||||||||||    
T  38117100 tatgaagcacggacacccctcggattaggcgtgtcccggtgtcggacacgtgt 38117152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 402
Target Start/End: Original strand, 11223794 - 11223841
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggaca 402  Q
    ||||||||||||||||| |||||||||| |||||||| ||||| ||||    
T  11223794 tatgaagcacggacactcctcagattaggcgtgtcccggtgtcagaca 11223841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 402
Target Start/End: Original strand, 23058389 - 23058432
Alignment:
Q  359 aagcacggacacttctcagattagccgtgtcccagtgtcggaca 402  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||    
T  23058389 aagcacggacacttctcggattaggcgtgtcccggtgtcggaca 23058432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 410
Target Start/End: Complemental strand, 37559095 - 37559040
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtcaa 410  Q
    ||||||||||||||||| ||| |||||  ||||| || ||||||||||||||||||    
T  37559095 tatgaagcacggacactcctcggattaagcgtgtaccggtgtcggacacgtgtcaa 37559040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 409
Target Start/End: Original strand, 32749755 - 32749809
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtca 409  Q
    |||||||| |||||||| || |||| || |||||||||||||||||||| |||||    
T  32749755 tatgaagcgcggacactccttagataaggcgtgtcccagtgtcggacacatgtca 32749809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 18840954 - 18841007
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| ||||||  ||||||| |||||||||| |||||    
T  18840954 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtc 18841007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 23718138 - 23718089
Alignment:
Q  354 ttatgaagcacggacacttctcagattagccgtgtcccagtgtcggacac 403  Q
    ||||||| |||||||||||||||||||||  || |||||||||| |||||    
T  23718138 ttatgaaacacggacacttctcagattaggtgtttcccagtgtcagacac 23718089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 24105810 - 24105761
Alignment:
Q  354 ttatgaagcacggacacttctcagattagccgtgtcccagtgtcggacac 403  Q
    ||||||| |||||||||||||||||||||  || |||||||||| |||||    
T  24105810 ttatgaaacacggacacttctcagattaggtgtttcccagtgtcagacac 24105761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 30717460 - 30717513
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||  |||||| ||| ||||||||||| |||||||||    
T  30717460 tatgaagcacggacactccttggattaggcgtatcccagtgtcgaacacgtgtc 30717513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 44455 - 44507
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgt 407  Q
    |||||||||| |||||||||||||||| || ||||||||||||||||||||||    
T  44455 tatgaagcacagacacttctcagattaaccatgtcccagtgtcggacacgtgt 44507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 21576686 - 21576739
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| |||||||||||||| ||||||||||    
T  21576686 tatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtc 21576739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 39268541 - 39268592
Alignment:
Q  357 tgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||| ||| |||||| |||||||||||||||||||| ||||    
T  39268541 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacatgtc 39268592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 408
Target Start/End: Complemental strand, 30183675 - 30183625
Alignment:
Q  358 gaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||| ||||||||||  ||||| |||||||||||||||||||||||||    
T  30183675 gaagcacagacacttctcgaattaggcgtgtcccagtgtcggacacgtgtc 30183625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 31084446 - 31084393
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||| |||||||||| ||| |||||| | |||||||||||||||||||||||    
T  31084446 tatgaaccacggacactcctcggattaggcatgtcccagtgtcggacacgtgtc 31084393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 32766873 - 32766926
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| |||||||||| ||| |||  ||||||||||||||||    
T  32766873 tatgaagcacggacactcctcagattagacgtatcctggtgtcggacacgtgtc 32766926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 43564999 - 43564946
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||||||| |||||| |||||||| | ||||||||| ||||    
T  43564999 tatgaagcacggacacttctcggattaggcgtgtcccggcgtcggacacatgtc 43564946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 14873640 - 14873588
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgt 407  Q
    ||||||||||||||||| ||| |||||| |||||||| |||| ||||||||||    
T  14873640 tatgaagcacggacactcctcggattaggcgtgtcccggtgttggacacgtgt 14873588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 402
Target Start/End: Original strand, 19820329 - 19820376
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggaca 402  Q
    ||||||||||||||||| ||| |||||| |||||||| ||||||||||    
T  19820329 tatgaagcacggacactcctctgattaggcgtgtcccggtgtcggaca 19820376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 21190998 - 21191049
Alignment:
Q  356 atgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgt 407  Q
    |||||||||||||||| ||| |||||| |||||||| | |||||||||||||    
T  21190998 atgaagcacggacactcctcggattaggcgtgtcccggagtcggacacgtgt 21191049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 17088402 - 17088358
Alignment:
Q  362 cacggacacttctcagattagccgtgtcccagtgtcggacacgtg 406  Q
    |||||||||| ||| |||||| |||||||| ||||||||||||||    
T  17088402 cacggacactcctcggattaggcgtgtcccggtgtcggacacgtg 17088358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 42893478 - 42893426
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgt 407  Q
    ||||||||| ||||||| |||| ||||| |||||||  |||||||||||||||    
T  42893478 tatgaagcatggacactcctcatattaggcgtgtcctggtgtcggacacgtgt 42893426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 3025668 - 3025616
Alignment:
Q  356 atgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||||||||||| ||| ||||||||||||| ||||||| ||||||||||    
T  3025668 atgaagcacggacactcctcggattagccgtgtcacagtgtcagacacgtgtc 3025616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 27213643 - 27213595
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacac 403  Q
    ||||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  27213643 tatgaagcacggacacttctcggattagccgtgtcccggtgtccgacac 27213595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 400
Target Start/End: Original strand, 15816059 - 15816104
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcgga 400  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||||    
T  15816059 tatgaagcacggacacttctcggattaggcgtgtcccggtgtcgga 15816104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 22652105 - 22652052
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| |||||||| ||||||||||| ||||    
T  22652105 tatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtc 22652052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 39820546 - 39820498
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacg 404  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||||||||    
T  39820546 tatgaagcacggacacttctcggattaggcgtgtccc-gtgtcggacacg 39820498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 408
Target Start/End: Complemental strand, 5813707 - 5813657
Alignment:
Q  358 gaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||||||||| |||  ||||| |||||||| ||||||||||||||||    
T  5813707 gaagcacggacactcctccaattaggcgtgtcccggtgtcggacacgtgtc 5813657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 409
Target Start/End: Original strand, 22197676 - 22197726
Alignment:
Q  359 aagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtca 409  Q
    ||||||||||||| |||||||||| ||||  || |||||||||||||||||    
T  22197676 aagcacggacactcctcagattaggcgtgatccggtgtcggacacgtgtca 22197726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 8343445 - 8343392
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||||| ||||||  || |||||| |||||||| ||||||||||||||||    
T  8343445 tatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacgtgtc 8343392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 11803388 - 11803335
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| ||||| || |||||||||| |||||    
T  11803388 tatgaagcacggacactcctcggattagacgtgtacctgtgtcggacatgtgtc 11803335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 18407837 - 18407784
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| |||  ||||| ||||||| ||||||||||| |||||    
T  18407837 tatgaagcacggacactcctccaattaggcgtgtcctagtgtcggacatgtgtc 18407784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 21465541 - 21465488
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| |||| ||||| ||| |||| |||| |||||||||||    
T  21465541 tatgaagcacggacactcctcaaattaggcgtatccctgtgttggacacgtgtc 21465488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 24413500 - 24413549
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacg 404  Q
    ||||||||||||||||||||| |||||| ||||||||  ||| |||||||    
T  24413500 tatgaagcacggacacttctcggattagacgtgtcccgctgttggacacg 24413549  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 26902105 - 26902158
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||||||| || |||||||| ||| | ||||||||||    
T  26902105 tatgaagcacggacactcctcagataaggcgtgtccccgtgccagacacgtgtc 26902158  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 29447573 - 29447520
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| | |||||| ||||||||||| ||||    
T  29447573 tatgaagcacggacactcctccgattagacctgtcccggtgtcggacacatgtc 29447520  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 29510234 - 29510283
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacg 404  Q
    ||||||||||||||||| ||| ||||||  ||||||| ||||||||||||    
T  29510234 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacg 29510283  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 30067969 - 30068017
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacac 403  Q
    |||||||||||||||||  || ||||||  |||||||||||||||||||    
T  30067969 tatgaagcacggacactcatcggattaggtgtgtcccagtgtcggacac 30068017  T

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Target: scaffold0793 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 4822 - 4875
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||| |||||| |||||||| |||||||||| |||||    
T  4822 tatgaagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtc 4875  T

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Target: scaffold0380 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 8719 - 8666
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||||||| ||  |||||| ||| |||||||||||||||||||||    
T  8719 tatgaagcacggacactccttggattaggcgtatcccagtgtcggacacgtgtc 8666  T

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Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 8916 - 8863
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    ||||||||||||| ||| |||||||||| |||||| | ||||||||||||||||    
T  8916 tatgaagcacggagactcctcagattaggcgtgtctcggtgtcggacacgtgtc 8863  T

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Target: scaffold0019 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 71854 - 71802
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgt 407  Q
    |||||||||| |||||| ||| |||||| |||||||| |||||||||||||||    
T  71854 tatgaagcaccgacactcctcggattagtcgtgtcccggtgtcggacacgtgt 71802  T

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Target: scaffold0450 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 405
Target Start/End: Original strand, 8560 - 8615
Alignment:
Q  350 aaatttatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgt 405  Q
    |||| ||||||||||||||||| |||  ||||| ||||| ||||||||||||||||    
T  8560 aaatctatgaagcacggacactcctcgaattaggcgtgtaccagtgtcggacacgt 8615  T

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Target: scaffold0652 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 402 - 452
Alignment:
Q  354 ttatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacg 404  Q
    |||||||||||||||||| ||| ||||||  ||||||| ||||||||||||    
T  402 ttatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacg 452  T

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Target: scaffold0475 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 3426 - 3384
Alignment:
Q  355 tatgaagcacggacacttctcagattagccgtgtcccagtgtc 397  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||    
T  3426 tatgaagcacggacactcctcggattaggcgtgtcccagtgtc 3384  T

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Target: scaffold0361 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 408
Target Start/End: Complemental strand, 14660 - 14592
Alignment:
Q  341 acaatgttaaaatt-tatgaagcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtc 408  Q
    |||||||| ||||| ||||||||||| ||||| ||  |||||| |||||| | ||||||||||||||||    
T  14660 acaatgtttaaattctatgaagcacgtacactccttcgattaggcgtgtctcggtgtcggacacgtgtc 14592  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 409
Target Start/End: Complemental strand, 53303 - 53255
Alignment:
Q  361 gcacggacacttctcagattagccgtgtcccagtgtcggacacgtgtca 409  Q
    ||||||||||||||  |||||  |||||||| |||||||||||||||||    
T  53303 gcacggacacttcttggattaaacgtgtcccggtgtcggacacgtgtca 53255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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