View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3635_high_12 (Length: 227)

Name: NF3635_high_12
Description: NF3635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3635_high_12
NF3635_high_12
[»] chr7 (8 HSPs)
chr7 (1-227)||(48598152-48598380)
chr7 (1-67)||(11809369-11809434)
chr7 (2-67)||(11811007-11811071)
chr7 (3-67)||(11816944-11817007)
chr7 (1-67)||(27993907-27993973)
chr7 (4-67)||(11812604-11812665)
chr7 (89-130)||(9730081-9730122)
chr7 (30-67)||(11820648-11820685)
[»] chr1 (4 HSPs)
chr1 (1-67)||(50127251-50127317)
chr1 (1-67)||(3387660-3387726)
chr1 (12-67)||(16426437-16426492)
chr1 (26-67)||(3954955-3954996)
[»] chr8 (4 HSPs)
chr8 (1-65)||(27401830-27401894)
chr8 (1-67)||(18393642-18393708)
chr8 (1-67)||(28869856-28869922)
chr8 (26-63)||(2796200-2796237)
[»] chr2 (3 HSPs)
chr2 (2-67)||(17651264-17651329)
chr2 (89-159)||(26575979-26576049)
chr2 (89-129)||(41848967-41849007)
[»] scaffold1723 (2 HSPs)
scaffold1723 (1-61)||(428-488)
scaffold1723 (90-129)||(511-550)
[»] chr6 (1 HSPs)
chr6 (1-59)||(33234945-33235002)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 48598380 - 48598152
Alignment:
Q  1 ctattgtatcgtgttatataaattattttaatgaaatgaattgttcaagttagatgcatatgtatgttttaaaaaacttttttgacggtagatcttctat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48598380 ctattgtatcgtgttatataaattattttaatgaaatgaattgttcaagttagatgcatatgtatgttttaaaaaacttttttgacggtagatcttttat 48598281  T
Q  101 aaataaattaatatatagataacggtgtcatatgtttttcacattaaaggtgtcgacgtattcgtgtagtatcaaatgtt---tgtgtgagagtgtgtgc 197  Q
    |||||||||||||||||||||  |||||||||||||||||||||||  |||||||||||||||||||||||| |||||||   |||||||||||||||||    
T  48598280 aaataaattaatatatagatagtggtgtcatatgtttttcacattagcggtgtcgacgtattcgtgtagtat-aaatgttttgtgtgtgagagtgtgtgc 48598182  T
Q  198 ttcttagactgtatgtatgtattttctttt 227  Q
    ||||||||||||||||||||||||| ||||    
T  48598181 ttcttagactgtatgtatgtattttttttt 48598152  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11809369 - 11809434
Alignment:
Q  1 ctattgtatcgtgttatataaattattttaatgaaatgaattgttcaagttagatgcatatgtatgt 67  Q
    |||||||||| ||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||||    
T  11809369 ctattgtatcttgttatataaatt-ttttaatgaaataaattgctcaagttagaagcatatgtatgt 11809434  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 11811007 - 11811071
Alignment:
Q  2 tattgtatcgtgttatataaattattttaatgaaatgaattgttcaagttagatgcatatgtatgt 67  Q
    ||||||||| ||||| ||||||| |||||||||||| ||||| |||||||||| ||||||||||||    
T  11811007 tattgtatcttgttagataaatt-ttttaatgaaataaattgctcaagttagaggcatatgtatgt 11811071  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 11816944 - 11817007
Alignment:
Q  3 attgtatcgtgttatataaattattttaatgaaatgaattgttcaagttagatgcatatgtatgt 67  Q
    |||||||| ||||||||||||| |||||||||||| ||||| ||| ||||||||| |||||||||    
T  11816944 attgtatcttgttatataaatt-ttttaatgaaataaattgctcatgttagatgcttatgtatgt 11817007  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 27993973 - 27993907
Alignment:
Q  1 ctattgtatcgtgttatataaattattttaatgaaatgaattgttcaagttagatgcatatgtatgt 67  Q
    |||||||||| ||||||| || ||  ||||||||||| ||||| |||||||| ||||||||||||||    
T  27993973 ctattgtatcttgttatagaactttatttaatgaaataaattgctcaagttaaatgcatatgtatgt 27993907  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 11812604 - 11812665
Alignment:
Q  4 ttgtatcgtgttatataaattattttaatgaaatgaattgttcaagttagatgcatatgtatgt 67  Q
    ||||||| ||||||| |||||  ||||||||||| ||||| |||| ||||||||||||||||||    
T  11812604 ttgtatcttgttatagaaatt--tttaatgaaataaattgctcaaattagatgcatatgtatgt 11812665  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 9730081 - 9730122
Alignment:
Q  89 tagatcttctataaataaattaatatatagataacggtgtca 130  Q
    |||||||| ||||||||||||||||||||| || ||||||||    
T  9730081 tagatcttttataaataaattaatatataggtagcggtgtca 9730122  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 11820648 - 11820685
Alignment:
Q  30 aatgaaatgaattgttcaagttagatgcatatgtatgt 67  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  11820648 aatgaaataaattgctcaagttagatgcatatgtatgt 11820685  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 50127251 - 50127317
Alignment:
Q  1 ctattgtatcgtgttatataaattattttaatgaaatgaattgttcaagttagatgcatatgtatgt 67  Q
    |||||||||| ||||||| || ||  ||||||||||| |||||||||||||||||||||||||||||    
T  50127251 ctattgtatcttgttatagaactttatttaatgaaataaattgttcaagttagatgcatatgtatgt 50127317  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 3387726 - 3387660
Alignment:
Q  1 ctattgtatcgtgttatataaattattttaatgaaatgaattgttcaagttagatgcatatgtatgt 67  Q
    ||||| |||| ||||||| || || ||||||| |||| |||||||||||||| ||||||||||||||    
T  3387726 ctattttatcttgttatagaactttttttaataaaataaattgttcaagttaaatgcatatgtatgt 3387660  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 16426492 - 16426437
Alignment:
Q  12 tgttatataaattattttaatgaaatgaattgttcaagttagatgcatatgtatgt 67  Q
    ||||||| || || |||||||||| | ||||| |||||||||||||||||||||||    
T  16426492 tgttatagaacttgttttaatgaagtaaattgctcaagttagatgcatatgtatgt 16426437  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 3954996 - 3954955
Alignment:
Q  26 ttttaatgaaatgaattgttcaagttagatgcatatgtatgt 67  Q
    |||||||||||| ||||| |||||||||||||| ||||||||    
T  3954996 ttttaatgaaataaattgctcaagttagatgcacatgtatgt 3954955  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27401894 - 27401830
Alignment:
Q  1 ctattgtatcgtgttatataaattattttaatgaaatgaattgttcaagttagatgcatatgtat 65  Q
    |||||||||| |||||||||| || |||||||||||| ||||| |||||||||||||| ||||||    
T  27401894 ctattgtatcttgttatataactttttttaatgaaataaattgctcaagttagatgcagatgtat 27401830  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 18393642 - 18393708
Alignment:
Q  1 ctattgtatcgtgttatataaattattttaatgaaatgaattgttcaagttagatgcatatgtatgt 67  Q
    ||||| |||| ||||||| || || ||||||| |||| |||||||||||||| ||||||||||||||    
T  18393642 ctattttatcttgttataaaactttttttaataaaataaattgttcaagttaaatgcatatgtatgt 18393708  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 28869922 - 28869856
Alignment:
Q  1 ctattgtatcgtgttatataaattattttaatgaaatgaattgttcaagttagatgcatatgtatgt 67  Q
    ||||| |||| ||| |||||  || |||||||||||| |||| || |||||||||||||||||||||    
T  28869922 ctattatatcttgtgatatatctttttttaatgaaataaattatttaagttagatgcatatgtatgt 28869856  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 2796237 - 2796200
Alignment:
Q  26 ttttaatgaaatgaattgttcaagttagatgcatatgt 63  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  2796237 ttttaatgaaataaattgctcaagttagatgcatatgt 2796200  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 17651329 - 17651264
Alignment:
Q  2 tattgtatcgtgttatataaattattttaatgaaatgaattgttcaagttagatgcatatgtatgt 67  Q
    ||||||| | ||||||| || || || ||||||||| ||||| |||||||||||||||||||||||    
T  17651329 tattgtaacttgttatagaacttcttgtaatgaaataaattgctcaagttagatgcatatgtatgt 17651264  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 26576049 - 26575979
Alignment:
Q  89 tagatcttctataaataaattaatatatagataacggtgtcatatgtttttcacattaaaggtgtcgacgt 159  Q
    |||||| ||| |||||||||||| |||||  |||||||||| ||| ||||| ||||||  |||||||||||    
T  26576049 tagatcgtctttaaataaattaaaatatatgtaacggtgtcctatattttttacattagcggtgtcgacgt 26575979  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 41849007 - 41848967
Alignment:
Q  89 tagatcttctataaataaattaatatatagataacggtgtc 129  Q
    ||||| || |||||||||||||||||||||||| |||||||    
T  41849007 tagatattttataaataaattaatatatagatagcggtgtc 41848967  T

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Target: scaffold1723 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 428 - 488
Alignment:
Q  1 ctattgtatcgtgttatataaattattttaatgaaatgaattgttcaagttagatgcatat 61  Q
    |||||||||| ||||||| || || |||||||||||| | ||| |||||||||||||||||    
T  428 ctattgtatcttgttatagaattttttttaatgaaataatttgctcaagttagatgcatat 488  T

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Target: scaffold1723; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 511 - 550
Alignment:
Q  90 agatcttctataaataaattaatatatagataacggtgtc 129  Q
    ||||||| |||||||||||||||||||||||| |||||||    
T  511 agatcttttataaataaattaatatatagatagcggtgtc 550  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 33234945 - 33235002
Alignment:
Q  1 ctattgtatcgtgttatataaattattttaatgaaatgaattgttcaagttagatgcat 59  Q
    |||||||||| ||||||| || || |||||||||||| ||||| |||||||||||||||    
T  33234945 ctattgtatcttgttataaaactt-ttttaatgaaataaattgctcaagttagatgcat 33235002  T

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