View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3635_high_2 (Length: 581)
Name: NF3635_high_2
Description: NF3635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3635_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 513; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 10 - 566
Target Start/End: Original strand, 28287910 - 28288466
Alignment:
| Q |
10 |
attatactagtcaagttggaagagtcatattttccaagaaagttttactatgggactcaaagataggtcaactcactgacttcacaacccattacacctt |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28287910 |
attatactagtcaagttggaagagtcatattttccaagaaagttttactatgggactcaaaaataggtcaactcactgacttcacaacccattacacctt |
28288009 |
T |
|
| Q |
110 |
tattattgacactcaaaataattctagatatggccatggaattgcctttttcttggttccttttggatttgaaatcccacctaattctgctggtgccttt |
209 |
Q |
| |
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|||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28288010 |
tattatcgacactcaaaatagttctagatatggccatggaattgcatttttcttggttccttttggatttgaaatcccacctaattctgctggtgccttt |
28288109 |
T |
|
| Q |
210 |
tttggtctatttaacaccacgacaatgaattcaactagtaaccttcttcatgtggagtttgattcttacgcaaatcgtccctggggtgagacaacggagc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28288110 |
tttggtctatttaacaccacgacaatgaattcaaccagtaaccttcttcatgtggagtttgattcttacgcaaatcgtccctggggtgagacaacggagc |
28288209 |
T |
|
| Q |
310 |
atgtgggaatcaacaacaattcaatcatttcatcggtgtcaacaccttggaatgcaagtttacatagtggagaaactactgaggtatggattaactacaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28288210 |
atgtgggaatcaacaacaattcaatcatttcatcggtgtcaacaccttggaacgcaagtttacatagtggagaaactactgaggtatggattaactataa |
28288309 |
T |
|
| Q |
410 |
ttctacaaccaaaaatttgaatgtatcttggaaatatcaaaacacctatgatcctcaagaaaaaactagtatttcatatcaaattgacttgataaaggtc |
509 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
28288310 |
ttctacaaccaaaaatttgaatgtatcttggaaatatcaaaacacctatgatcctcaagaaaaaactagtatttcatatgaaattgacttaataaaggtc |
28288409 |
T |
|
| Q |
510 |
ctacctgaatgggttactgtaggaatttctgcttcaacaggttctattggagaaaag |
566 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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|
| T |
28288410 |
ctacctgaatgggttactataggaatttctgcttcaacaggttccattggagaaaag |
28288466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 74 - 563
Target Start/End: Original strand, 28278114 - 28278609
Alignment:
| Q |
74 |
aggtcaactcactgacttcacaacccattacacctttattattgacactcaaaataattctagatatggccatggaattgcctttttcttggttcctttt |
173 |
Q |
| |
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|||||||||| ||||||| | ||| |||||||| ||||| ||||||||||||||| | ||| |||||| ||||||||||| |||||| | ||||| | |
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| T |
28278114 |
aggtcaactcgctgactttaaaactcattacacttttatcattgacactcaaaatcgtactacatatggtcatggaattgcgtttttccttgttccggtg |
28278213 |
T |
|
| Q |
174 |
ggatttgaaatcccacctaattctgctggtgccttttttggtctatttaacaccacgacaatgaattcaac---tagtaacc---ttcttcatgtggagt |
267 |
Q |
| |
|
||| ||||||| ||||| ||||||||||||| ||| | || |||||||||||||| |||||| |||| | |||||||| || ||||||| |||| |
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|
| T |
28278214 |
ggaattgaaattccacccaattctgctggtggcttgatgggcctatttaacaccacaacaatggtttcatcatctagtaaccgaattgttcatgttgagt |
28278313 |
T |
|
| Q |
268 |
ttgattcttacgcaaatcgtccctggggtgagacaacggagcatgtgggaatcaacaacaattcaatcatttcatcggtgtcaacaccttggaatgcaag |
367 |
Q |
| |
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||||||||| ||||||| || | | |||||||| |||||||||||||||||||| |||||||||| ||||| | |||||||||||||||||||| |
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| T |
28278314 |
ttgattctttcgcaaatagtgaatttagcgagacaacagagcatgtgggaatcaacaataattcaatcaaatcatcaatatcaacaccttggaatgcaag |
28278413 |
T |
|
| Q |
368 |
tttacatagtggagaaactactgaggtatggattaactacaattctacaaccaaaaatttgaatgtatcttggaaatatcaaaacacctatgatcctcaa |
467 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||| ||||||||||| |||||| ||||||| |||||||||| ||||||||| ||| | ||||||| |
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|
| T |
28278414 |
tttacatagtggagacaatgctgaggtatggattagctacaattctaaaaccaagaatttgactgtatcttgggaatatcaaactacccctagtcctcaa |
28278513 |
T |
|
| Q |
468 |
gaaaaaactagtatttcatatcaaattgacttgataaaggtcctacctgaatgggttactgtaggaatttctgcttcaacaggttctattggagaa |
563 |
Q |
| |
|
|||||||||| | |||||||||||||||| ||||| |||||||||||||||||||| ||||| ||| |||||||| |||||||||| |||||||| |
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|
| T |
28278514 |
gaaaaaactaatctttcatatcaaattgatttgatgaaggtcctacctgaatgggtaactgttggattttctgctgcaacaggttccgttggagaa |
28278609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 41 - 552
Target Start/End: Complemental strand, 28305818 - 28305298
Alignment:
| Q |
41 |
ttccaagaaagttttactatgggactcaaagataggtcaactcactgacttcacaacccattacacctttattattgacactcaaaata------attct |
134 |
Q |
| |
|
|||||| || || ||||| ||||||||||| | |||||||||||||||||||||||| || ||||| ||||| || |||||| | || ||| |
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|
| T |
28305818 |
ttccaaaaaggtgttactttgggactcaaaaacaggtcaactcactgacttcacaactcactacacttttatcatcaacactcgaggtagatcaccttca |
28305719 |
T |
|
| Q |
135 |
agatatggccatggaattgcctttttcttggttccttttggatttgaaatcccacctaattctgctggtgccttttttggtctatttaacaccacgacaa |
234 |
Q |
| |
|
||||||||||| ||||||||||||| | | ||| |||||||||||||||||| || || |||||| ||| | || ||||| |||||||| |||| |
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|
| T |
28305718 |
ttctatggccatggccttgcctttttcttagctgcttatggatttgaaatcccaccaaactcctctggtggcttgatgggactattcaacaccacaacaa |
28305619 |
T |
|
| Q |
235 |
tgaattcaactagtaacc---ttcttcatgtggagtttgattcttacgcaaatcgtccctggggtgagacaacggagcatgtgggaatcaacaacaattc |
331 |
Q |
| |
|
|| |||| ||||||||| || ||||||||||||||||||||| ||||||| || | | |||||||| |||||||||||||||||||| ||||| |
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| T |
28305618 |
tgctttcatctagtaaccatattgttcatgtggagtttgattctttcgcaaatagtgaatttagcgagacaacagagcatgtgggaatcaacaataattc |
28305519 |
T |
|
| Q |
332 |
aatcatttcatcggtgtcaacaccttggaatgcaagtttacatagtggagaaactactgaggtatggattaactacaattctacaaccaaaaatttgaat |
431 |
Q |
| |
|
||||| ||||| | ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| ||||||| | |
|
|
| T |
28305518 |
aatcaaatcatcaatatcaacaccttggaatgcaagtttacatagtggagacactgctgaggtatggattaggtacaattctacaaccaagaatttgact |
28305419 |
T |
|
| Q |
432 |
gtatcttggaaatatcaaaacacctatgatcctcaagaaaaaactagtatttcatatcaaattgacttgataaaggtcctacctgaatgggttactgtag |
531 |
Q |
| |
|
||||||||| ||||||||| |||| | ||||||||||||||||| | |||||||||||||||| || | || || |||||||||||||||| | | |
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|
| T |
28305418 |
gtatcttgggaatatcaaacgacctctagtcctcaagaaaaaactaatctttcatatcaaattgatttcaagaaagttttacctgaatgggttacaattg |
28305319 |
T |
|
| Q |
532 |
gaatttctgcttcaacaggtt |
552 |
Q |
| |
|
|| |||||||| |||| |||| |
|
|
| T |
28305318 |
gattttctgctgcaactggtt |
28305298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 20 - 551
Target Start/End: Complemental strand, 28265815 - 28265281
Alignment:
| Q |
20 |
tcaagttggaagagtcatattttccaagaaagttttactatgggactcaaagataggtcaactcactgacttcacaacccattacacctttattattgac |
119 |
Q |
| |
|
|||||||||||| | ||| | ||||| || || ||||| ||||| ||||| | ||||||| ||||||| |||| |||||||||||| ||||| |||||| |
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|
| T |
28265815 |
tcaagttggaagggccatgtattccagaaaggtgttactttgggattcaaaaacaggtcaagtcactgatttcaaaacccattacacttttatcattgac |
28265716 |
T |
|
| Q |
120 |
actcaaaataattctagatatggccatggaattgcctttttcttggttccttttggatttgaaatcccacctaattctgctggtgccttttttggtctat |
219 |
Q |
| |
|
||||||||||||||||| |||| |||||| |||| ||||| |||| ||||||||||||||| || ||||| ||||| ||| ||| ||| | || |||| |
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|
| T |
28265715 |
actcaaaataattctaggcatggtcatggacttgcattttttttggctccttttggatttgatattccaccaaattcagctactgcttttatgggcctat |
28265616 |
T |
|
| Q |
220 |
ttaacaccacgacaatgaattcaactagtaacc---ttcttcatgtggagtttgattcttacgcaaatcgtccctggggtgagacaacggagcatgtggg |
316 |
Q |
| |
|
|||||| || || ||| |||| ||||||||| || ||| ||||||||||||||||| | ||| || |||||||||||||| ||||||||||| |
|
|
| T |
28265615 |
ttaacatgacaaccatggtttcatctagtaaccaaattgttcttgtggagtttgattcttttcccaatggtgaatggggtgagacaaccgagcatgtggg |
28265516 |
T |
|
| Q |
317 |
aatcaacaacaattcaatcatttcatcggtgtcaacaccttggaatgcaagtttacatagtggagaaactactgaggtatggattaactacaattctaca |
416 |
Q |
| |
|
||||||| ||||||||||| ||||| |||| |||||||||||||| ||| |||| |||||||| | | ||||||||||||||| | |||||||||| |
|
|
| T |
28265515 |
aatcaacgttaattcaatcatgtcatctgtgtttacaccttggaatgctagtctacacagtggagacattgctgaggtatggattagtttcaattctaca |
28265416 |
T |
|
| Q |
417 |
accaaaaatttgaatgtatcttggaaatatcaaaacacctatgatcctcaagaaaaaactagtatttcatatcaaattgacttgataaaggtcctacctg |
516 |
Q |
| |
|
||||| ||||| | |||||||||||||| |||| || | |||| ||||||||||||| |||||||| ||||||| || || ||||| | |||| |
|
|
| T |
28265415 |
accaagaatttaacagtatcttggaaataccaaagaacttcaaatccagaagaaaaaactagcctttcatatgaaattgatttaatgaaggttttgcctg |
28265316 |
T |
|
| Q |
517 |
aatgggttactgtaggaatttctgcttcaacaggt |
551 |
Q |
| |
|
|||||||||| ||||| |||||||||||| |||| |
|
|
| T |
28265315 |
aatgggttaccataggattttctgcttcaataggt |
28265281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 19 - 548
Target Start/End: Complemental strand, 28295638 - 28295100
Alignment:
| Q |
19 |
gtcaagttggaagagtcatattttccaagaaagttttactatgggactcaaagataggtcaactcactgacttcacaacccattacacctttattattga |
118 |
Q |
| |
|
||||||||||||||||| | | ||| | ||||| ||||| ||||| ||||| | ||| ||||||||||||||||||| |||||||| ||| | || | |
|
|
| T |
28295638 |
gtcaagttggaagagtcttctattcagaaaaagtgttactttgggattcaaacacaggaaaactcactgacttcacaactcattacacttttgtcatcaa |
28295539 |
T |
|
| Q |
119 |
cactcaaaataa------ttctagatatggccatggaattgcctttttcttggttccttttggatttgaaatcccacctaattctgctggtgcctttttt |
212 |
Q |
| |
|
||||||| || ||| |||||||||||| ||||||||||||||||||||| ||||||||||||||| | ||||||| ||||| |||| | |
|
|
| T |
28295538 |
cactcaaggtagatcaccttcattatatggccatggtcttgcctttttcttggttccttatggatttgaaatccccctcaattctgatggtggctttatg |
28295439 |
T |
|
| Q |
213 |
ggtctatttaacaccacgacaatgaattcaactagtaacc---ttcttcatgtggagtttgattcttacgcaaatcgtccctggggtgagacaacggagc |
309 |
Q |
| |
|
||||||||||||||||| |||||| |||| ||||||||| || ||||||| || |||||||||| |||||||||| | | ||| ||| | | |
|
|
| T |
28295438 |
ggtctatttaacaccacaacaatggtttcatctagtaaccaaattgttcatgtagaatttgattctttcgcaaatcgtgaatttcgcgaggcaagaggtc |
28295339 |
T |
|
| Q |
310 |
atgtgggaatcaacaacaattcaatcatttcatcggtgtcaacaccttggaatgcaagtttacatagtggagaaactactgaggtatggattaactacaa |
409 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| | | |||||||||||||| || |||||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
28295338 |
atgtgggaatcaacattaattcaatcatttcatcagctacgacaccttggaatgccagcaaacatagtggagacactgctgaggtatggattaggtacaa |
28295239 |
T |
|
| Q |
410 |
ttctacaaccaaaaatttgaatgtatcttggaaatatcaaaacacctatgatcctcaagaaaaaactagtatttcatatcaaattgacttgataaaggtc |
509 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| |||| |||| ||||||||||||| |||||| ||||| | |||||| || || || || |
|
|
| T |
28295238 |
ttctacaaccaagaatttgaccgtatcttggaaataccaaactacctcaaatcctcaagaaaatactagtctttcaatttcaattgatttaatgaaagtt |
28295139 |
T |
|
| Q |
510 |
ctacctgaatgggttactgtaggaatttctgcttcaaca |
548 |
Q |
| |
|
| ||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
28295138 |
atgcctgaatggattactgtaggattttctgctgcaaca |
28295100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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